PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G26560.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 453aa    MW: 48067.2 Da    PI: 7.6146
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G26560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19205255256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OB04G26560.1 205 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 255
                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-32204263No hitNo description
SMARTSM003802.5E-38205268IPR001471AP2/ERF domain
PROSITE profilePS5103222.998205262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32205263IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-23205264IPR016177DNA-binding domain
PfamPF008472.7E-12206255IPR001471AP2/ERF domain
PRINTSPR003678.1E-11206217IPR001471AP2/ERF domain
PRINTSPR003678.1E-11228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDAPSGESGG GGGGRRWKGK GVTPIQPRRQ LGTVLEDASV ALLRPLKKIG RSPDRLHRSA  60
SSLSTSSSAP PSPRSSSASD APAGGILSSP PPPSARHIFP FAYEASAAAG GGSPRLHSMW  120
QQSSVSLPTS PQQQQPLQHQ QMISFGASPP CSTTQFVVPE NAQQQQMLLR YWSEALNLSP  180
RGGPGGLPPW LDQQLRAPPP PPQKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED  240
AAMAYDREAF KLRGENARLN FPDRFLGKGR AGGSGRTSVS SAAALSVAAA SCSSSSPSPP  300
ETPGEPNTQQ APQQQEQQRD PAGLSMEKQP QPPAPTSRQE GCSSDNTAAP YSAEMLHAPV  360
ASASGSGGMW VPPDESWFST WGPGSSFWDD YDMDNARGLF LHPRFSSDET SMDHSGTQGT  420
VPATAAGIDM ACDDVPVTSS SSDLPPNGTI SDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20204264465ATERF1
3gcc_A5e-20204264465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G26560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552300.0CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691525.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF054-like
TrEMBLJ3LZT10.0J3LZT1_ORYBR; Uncharacterized protein
STRINGOB04G26560.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-35ERF family protein