PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G41880.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 32358.6 Da    PI: 8.5653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G41880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.1e-06152197454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   + n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  OB03G41880.1 152 TTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 197
                   569***********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.639148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-12152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-5154202No hitNo description
SMARTSM003531.3E-5154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVKEEKIITE AAGARGYMDM LGLGEEADYL MCMSPSSYLS SPAASTTTAV ASPTCGSYLA  60
PPLYHQLVSF GGQDQYHGGD VFGFQYYGGD HVIPAVVPQK SSPTTECSSS VSSMSSSPTA  120
TAISSSKSQA FKKKGSRGCD QMKTTAPAAA PTTNKRPRVR RERLGERIIA LQQLVSPFGK  180
SDTASVLHEA LGYIRFLHDQ VQVLSSPYME RLPPSARVPE SSAGGVAAAA VAEAAPPRPS  240
DLRSRGLCLV PVSCTEHVAG TGHGRNGADL WSVAAGMAKA PATVTAAVER SKEAAVAALL  300
RGDRPGQQLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G41880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728330.0AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690492.10.0PREDICTED: transcription factor bHLH110-like
RefseqXP_015690493.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLJ3LT120.0J3LT12_ORYBR; Uncharacterized protein
STRINGOB03G41880.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-26bHLH family protein