PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB03G34400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 24662.2 Da PI: 4.8964 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.2 | 1.5e-18 | 41 | 122 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +++p +fa++++g s ++ l+ +sg++W++ + + + g++vl++GWkeFv+ n ++egD ++F+++g s+f v +f+ OB03G34400.1 41 TE-SMTVPARFADNFNGH--ISEEVNLRPPSGKTWSIGV-ASSGAGEVVLQSGWKEFVDGNSVQEGDCLLFRYSGVSSF--DVLIFDP 122 33.49*******888666..6779***************.4555566***************************99999..8888875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-24 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-23 | 28 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.875 | 29 | 123 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.36E-18 | 30 | 121 | No hit | No description |
SMART | SM01019 | 1.3E-9 | 32 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 40 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MGTLKMGKNC SVCKEWQEHC YWSHMADDSK HFLKHMAGDF TESMTVPARF ADNFNGHISE 60 EVNLRPPSGK TWSIGVASSG AGEVVLQSGW KEFVDGNSVQ EGDCLLFRYS GVSSFDVLIF 120 DPSGCEKASP HFAESHGGAG RNQDECEAKE DDDDEDVVKG VVEGGYYFGR NGRVGEYNLR 180 EEDKEEISRF PVPLHPGNPV FVHVIHAAHI RTSRYSILAS DSP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB03G34400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108660 | 1e-123 | AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650312.1 | 1e-131 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0622200-like | ||||
Swissprot | Q10GM3 | 1e-114 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | J3LQW4 | 1e-165 | J3LQW4_ORYBR; Uncharacterized protein | ||||
STRING | OB03G34400.1 | 1e-166 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-25 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|