PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G34370.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 449aa    MW: 52030.3 Da    PI: 10.2179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G34370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.7e-2128116198
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffkv+   + +++  +++p kfa +++g+++  k ++le++sg +++v++  +kk +r vl++GW++F++a++Lk gDf+vFk++g  +  l v +f
  OB03G34370.1  28 FFKVM--IYDFRQT-MIIPDKFAHHFKGVTA--KIVKLESRSGYTFDVQI--TKKLNRLVLGSGWESFASAHDLKMGDFLVFKYNG--NLLLQVLIF 115
                   78888..8888886.********77799955..58***************..*******************************977..444577777 PP

                   - CS
            B3  98 r 98 
                   +
  OB03G34370.1 116 D 116
                   6 PP
2B350.92.8e-16224313599
                   -..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   5 ltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +t+s+v+ s + l +++++  ++      ++++l+l++ + +sWev+++  +++++ + +t+GWk+Fv++n+Lk gD ++F+  + ++ +++v+++r
  OB03G34370.1 224 MTKSSVFGShCALEISRRYD-AYlP---YSGQELVLRH-HEKSWEVRFC--RYKNKsIKFTQGWKRFVQENNLKIGDLCLFQTLK-KNYSMNVHIIR 312
                   66666665548888888885.5532...3456899887.99*******4..33333389***********************665.77778999988 PP

                   S CS
            B3  99 k 99 
                   +
  OB03G34370.1 313 T 313
                   5 PP
3B335.42e-113674471498
                   T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   + l ++k++ +++  ++    ++l+l++   +sW+++++   +++    +++GWk+Fv +n+L+ gD ++F+   + + + +v+++r
  OB03G34370.1 367 CALEISKQYDDAYlPYN---AQELMLRH-CRQSWKIRFRR--YGNNtRKFSQGWKKFVLDNNLQMGDLCLFEILTKINYTINVHIIR 447
                   55666666666664333...34677776.6789*****44..3333245899********************666566667777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-2222120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-2325131IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32425118IPR003340B3 DNA binding domain
CDDcd100171.74E-2026116No hitNo description
PfamPF023624.8E-1928116IPR003340B3 DNA binding domain
SMARTSM010193.1E-1228118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-22209319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-18213312IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-17218312No hitNo description
PROSITE profilePS5086312.661221314IPR003340B3 DNA binding domain
PfamPF023621.9E-14223312IPR003340B3 DNA binding domain
SMARTSM010193.0E-8224314IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-20348447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-19349447IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-14354447No hitNo description
SMARTSM010191.2E-5356449IPR003340B3 DNA binding domain
PfamPF023623.2E-9368447IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547394449IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRKPNTRSTT QRNEHYHCNG IDGQEKYFFK VMIYDFRQTM IIPDKFAHHF KGVTAKIVKL  60
ESRSGYTFDV QITKKLNRLV LGSGWESFAS AHDLKMGDFL VFKYNGNLLL QVLIFDPSGC  120
EKAAPCSMKN AIGHFGQRWG EPIDTSSFQD HQQKPPQSGN EHWMQKDRSC KGNKIGNVRS  180
SSTPSKYSGC ILPRGICLPE FQEKKMKEMI QAIQSKTPMY GSVMTKSSVF GSHCALEISR  240
RYDAYLPYSG QELVLRHHEK SWEVRFCRYK NKSIKFTQGW KRFVQENNLK IGDLCLFQTL  300
KKNYSMNVHI IRTIRSSSTL SNVSGCVLPR GTCLPKTQEK KMKEKIQAIH SKTPMFGAVM  360
KKCSVSCALE ISKQYDDAYL PYNAQELMLR HCRQSWKIRF RRYGNNTRKF SQGWKKFVLD  420
NNLQMGDLCL FEILTKINYT INVHIIRKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G34370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689973.11e-177PREDICTED: putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-121Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLJ3LQW10.0J3LQW1_ORYBR; Uncharacterized protein
STRINGOB03G34370.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-22B3 family protein