PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G24510.1

Common Name

LOC102722378

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 169aa MW: 18486.3 Da PI: 9.2499

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G24510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.8	1.7e-11	22	63	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + rk +NR++ArrsR +K+++++ L +v++L eN+a + OB03G24510.1 22 Q-RNRKKSNRLSARRSRMKKQQYVDGLSVEVEQLRRENDATRA 63 3.45778*******************************98665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-12	16	81	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.1E-11	18	71	No hit	No description
PROSITE profile	PS50217	9.921	19	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-9	21	70	No hit	No description
Pfam	PF00170	2.7E-8	21	62	IPR004827	Basic-leucine zipper domain
CDD	cd14702	5.58E-14	22	72	No hit	No description
PROSITE pattern	PS00036	0	25	39	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSVAPVPEGA RRAAAAIEEE RQRNRKKSNR LSARRSRMKK QQYVDGLSVE VEQLRRENDA 60 TRAGVGAVLQ RCGLVEQENR VLLAHARELC STLQLRTSQL RLLGEVASVT LDVPDVADHL 120 MQLYGGGAGA GGLVMPLSPP PPPLPPQIQM LLQSDVMHTV SMLQGYESI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G24510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	1e-133	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649961.1	1e-118	PREDICTED: ocs element-binding factor 1-like
TrEMBL	J3LN25	1e-117	J3LN25_ORYBR; Uncharacterized protein
STRING	OB03G24510.1	1e-118	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	9e-12	basic leucine-zipper 44

Link Out ? help Back to Top
Entrez Gene	102722378