PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G30750.1
Common NameLOC102700024
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 271aa    MW: 29178.7 Da    PI: 5
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G30750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.55e-07446541
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                   C+ +e   +   C  ++  lC+ C +e+H        H++ p
  OB02G30750.1  4 QCDACEGAAAAVVCCADEAALCAACDVEIHAAnklaskHQRLP 46
                  7******99*********************6678888888877 PP
2zf-B_box26.61.2e-085585434
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                  ++C+ ++ek + +fC +++ l+C+dC + +H
  OB02G30750.1 55 PRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                  89**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
PfamPF006433.6E-5447IPR000315B-box-type zinc finger
SMARTSM003363.1E-9447IPR000315B-box-type zinc finger
SMARTSM003369.3E-145299IPR000315B-box-type zinc finger
CDDcd000213.67E-75596No hitNo description
PfamPF006432.8E-65595IPR000315B-box-type zinc finger
PROSITE profilePS501198.5035799IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKIQCDACEG AAAAVVCCAD EAALCAACDV EIHAANKLAS KHQRLPLEAL SAGLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGKHQRYLAT GIRVGFSSVC SANADQLPPP  120
APDHHAPHVA CSEQHHHQHP PALAAAAVDT QQAPSPQFLP QGWAVDELLQ FSDYESSDKL  180
QKESPLGFRE LEWFADIDLF HNQAPKGGAA RSTAEVPELF APSQAANDAA YYRPNRTASA  240
VVSAFTGVRQ SKKARVEIPD DDDYLIVPDL G
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G30750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647480.10.0PREDICTED: B-box zinc finger protein 25-like
TrEMBLJ3LEK80.0J3LEK8_ORYBR; Uncharacterized protein
STRINGOB02G30750.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.13e-49DBB family protein