PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G27380.1

Common Name

LOC102710758

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 411aa MW: 46976.3 Da PI: 6.9419

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G27380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5.3e-21	98	195	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdq 84 +W+ ++v++L+ a+ +++e++ + ++k++W+ vs +m ergf +sp+qC++k+++lnkryk+++e+ +++t ++ +++ ++++ OB02G27380.1 98 KWSSDMVKLLVSAVAYIDEDVDMDYgtsssrrkhamlKRKGKWKLVSMAMTERGFPVSPQQCEDKFNDLNKRYKRLTEILGRGTaCQIVEHPELLER 194 7************888887754223346677888899******************************************54888888888888 PP trihelix 85 l 85 + OB02G27380.1 195 M 195 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-20	96	221	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MEGNLPPRAL VHGSCGGGAF DLEASMQQQQ PPPPPFHFAQ DPHLHRGGMV PVRANPMLDL 60 GNVVKASPSD EEDVDDGHHH GGSSGGGGKG GNQWHRVKWS SDMVKLLVSA VAYIDEDVDM 120 DYGTSSSRRK HAMLKRKGKW KLVSMAMTER GFPVSPQQCE DKFNDLNKRY KRLTEILGRG 180 TACQIVEHPE LLERMRLSGK LKEEAKKHLI SKHLHYEEMC SYHNRNRMCL LEDPALQKSL 240 RLALRSGEEH TKKNPFGYDD EDFSDDDDED DEFDDLEVSA EEHHHGIHGA KRLKHDQEET 300 HFGSNLSEVA VIDMNKMLSE GSGGPTAEKS PSPFGMHNIR FEKRRLKIKA QMLKIEQKHF 360 KWLRFCKEKD RELEKMRLEN EKMKLENERL ELELKLKAIE MGIKPKKMFS D

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MEGNLPPRAL VHGSCGGGAF DLEASMQQQQ PPPPPFHFAQ DPHLHRGGMV PVRANPMLDL  60
GNVVKASPSD EEDVDDGHHH GGSSGGGGKG GNQWHRVKWS SDMVKLLVSA VAYIDEDVDM  120
DYGTSSSRRK HAMLKRKGKW KLVSMAMTER GFPVSPQQCE DKFNDLNKRY KRLTEILGRG  180
TACQIVEHPE LLERMRLSGK LKEEAKKHLI SKHLHYEEMC SYHNRNRMCL LEDPALQKSL  240
RLALRSGEEH TKKNPFGYDD EDFSDDDDED DEFDDLEVSA EEHHHGIHGA KRLKHDQEET  300
HFGSNLSEVA VIDMNKMLSE GSGGPTAEKS PSPFGMHNIR FEKRRLKIKA QMLKIEQKHF  360
KWLRFCKEKD RELEKMRLEN EKMKLENERL ELELKLKAIE MGIKPKKMFS D

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G27380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065397	0.0	AK065397.1 Oryza sativa Japonica Group cDNA clone:J013022H04, full insert sequence.
GenBank	AP004877	0.0	AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647354.1	0.0	PREDICTED: uncharacterized protein LOC102710758
TrEMBL	J3LDM1	0.0	J3LDM1_ORYBR; Uncharacterized protein
STRING	OB02G27380.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-64	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Entrez Gene	102710758