PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G19900.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 311aa    MW: 34658.7 Da    PI: 12.2964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G19900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-133585255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  OB02G19900.1 35 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 85
                  789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-173398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.2373384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-133596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-123589No hitNo description
PfamPF000106.9E-113585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-113990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTRVRPAPAP GGPPAPPSLA APPAAAWENE GGAAKMSHIT VERNRRKQMN EHLAVLRSLM  60
PCFYVKRGDQ ASIIGGVVDY IKELQQVLRS LEAKKNRKAY ADARGPRPAA AAAALMMKST  120
PPISPRLAVP ISPRTPTPGS PYKHPAAGGG GVRXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXPRHRARR PRQGAVPGRP RHRRRRRPRP RREGGVRRAE PGAEDGVAPR  240
AGPGAQDHRR PGEPLARDSP RQHQHRRRHH RPLLHHQDWD RMRAERRGAG ARNSANLLVT  300
YLHIYAYGQA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210220RHRRRRRPRPR
2215222RRPRPRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G19900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126103e-77CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LBH31e-119J3LBH3_ORYBR; Uncharacterized protein
STRINGOB02G19900.11e-120(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-40bHLH family protein