PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G50590.1
Common NameLOC102702233
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 440aa    MW: 47778 Da    PI: 8.6611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G50590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-1082107227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ C +++rtG C++G +C+F+H+p
  OB01G50590.1  82 EEPDCTYYLRTGLCRFGMSCRFNHPP 107
                   5799********************97 PP
2zf-CCCH38.91.4e-12127152227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+++++tGtCk+G++CkF+H++
  OB01G50590.1 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152
                   5799********************96 PP
3zf-CCCH37.15.1e-12174198327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C ++++tG+CkyG++CkF+H++
  OB01G50590.1 174 EKECAYYLKTGQCKYGNTCKFHHPE 198
                   679********************96 PP
4zf-CCCH39.31.1e-12335360227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+++++tG Ck+G+ CkF+H++
  OB01G50590.1 335 DQPECQYYMKTGDCKFGAVCKFHHPR 360
                   689*********************96 PP
5zf-CCCH41.62.1e-13380405126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +++elC+f++r+G+Ck+G++CkF H+
  OB01G50590.1 380 PGEELCKFYSRYGICKFGANCKFDHP 405
                   689**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-480107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75680108IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-882107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-583108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-486106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986125153IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5125152IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10127152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6128154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5131153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868171199IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5171198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6172198IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9174198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5177197IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023333361IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4339359IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7379406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3379407IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10381405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6381405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5383404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDDAGRASSA PAVVTVTASA AAPAPPPPPP PPPPPPSQLT ATAATESPSP DPAAFYGEGM  60
WQQMTMSGSG AMQPGPYPER PEEPDCTYYL RTGLCRFGMS CRFNHPPDRN LAIASARMKG  120
EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY  180
LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT TGPPSYAGTL ASWAFPRGSY  240
IPSPRWQNPS NYAPVIVPQG LVQVPSWNSY PGQMLPVSSS ESRLQSPGAQ QTYGTSQQAD  300
ASAGNQGMLS PYRSSSYPGP QYALQRENVF PERPDQPECQ YYMKTGDCKF GAVCKFHHPR  360
VRSMPTPDCV LSPVGLPLRP GEELCKFYSR YGICKFGANC KFDHPSMAPP MGVYAYGSAS  420
ANVPMVRRLM QSPSASAYTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G50590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645228.20.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLJ3L7530.0J3L753_ORYBR; Uncharacterized protein
STRINGOB01G50590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]