PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0197G10010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 38058.2 Da    PI: 6.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0197G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-104796154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r++ +  rE+ RRd++N+ f+eL + l ++     ++++Ka+iL   ++ +k+L
  OB0197G10010.1 47 RKVQKADREKMRRDKLNEQFQELASTLDPD----RPRNDKATILGDSIQMLKDL 96
                    5677889********************997....799**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.7984696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-647100No hitNo description
PfamPF000108.9E-84796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1347116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1347119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-752102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGALGLPQLV SIFPQRRRDS YICALTTDYI ANSGRTECKT QGLVGTRKVQ KADREKMRRD  60
KLNEQFQELA STLDPDRPRN DKATILGDSI QMLKDLTSQV NKLKAEYTSL SEEARELTQE  120
KNELRDEKAS LKFEVDNLNT QFHQRSRVLY PWTGMEPSVV IGPPPPYPFS VPVPIPSGAV  180
PMHPQLQAYP YFQNQTSGTV PNPCTPYMAY TRPVHPPTDQ PSNQFNAPVQ HSSSNRSHSM  240
AQDCRSKSSK LQEASCRGKS DDDFNDVATD LELKTPGSSA PLQSELASKD SSSDLKKKQC  300
IQETNGSTVT ESSSSSRCSS SGPPDVSDSA EDGSVGDDKR STVHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0197G10010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0697900.0AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence.
GenBankAK1039860.0AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence.
GenBankHQ8588500.0HQ858850.1 Oryza sativa Japonica Group isolate UT1613 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665082.10.0PREDICTED: transcription factor bHLH121-like isoform X1
TrEMBLJ3KVJ10.0J3KVJ1_ORYBR; Uncharacterized protein
STRINGOB0197G10010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-66bHLH family protein