PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf30065g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 226aa MW: 25419 Da PI: 9.5202 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 213.6 | 6.6e-66 | 50 | 205 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 sse+vCy+qCnfCnt+lavsvP + +f +vtvrCGhC++llsv+++ + q l+ + +++++++++ + s+ ++ Niben101Scf30065g00001.1 50 ISSERVCYLQCNFCNTVLAVSVPCSNIFAIVTVRCGHCSNLLSVSMQSSPQPLPLPDP--------QKQQRQQSNVENGSKACES 126 689********************************************99999999985........3333333333444444445 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+s+ ++ + ++ + + pr+ p irPPekrqr PsaynrfikeeiqrikasnPdishr+afs+aaknWahfP+ihfgl Niben101Scf30065g00001.1 127 SSSSKFNRFSAIDYS-PQIEPRITP-IRPPEKRQRLPSAYNRFIKEEIQRIKASNPDISHRQAFSTAAKNWAHFPHIHFGL 205 555555555454444.455688888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.8E-69 | 51 | 205 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.59E-8 | 149 | 198 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-4 | 154 | 197 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
SIFSSFTLQF YDFTAYIHSS LCNTLIHPRF SAKNLRNSIT IMSLDMTSLI SSERVCYLQC 60 NFCNTVLAVS VPCSNIFAIV TVRCGHCSNL LSVSMQSSPQ PLPLPDPQKQ QRQQSNVENG 120 SKACESSSSS KFNRFSAIDY SPQIEPRITP IRPPEKRQRL PSAYNRFIKE EIQRIKASNP 180 DISHRQAFST AAKNWAHFPH IHFGLKQAKL DHAVAGESPH KSLGLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798278.1 | 1e-113 | PREDICTED: axial regulator YABBY 5-like | ||||
Refseq | XP_016503299.1 | 1e-113 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q9XFB0 | 3e-64 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A076FU30 | 1e-112 | A0A076FU30_TOBAC; FAS protein | ||||
TrEMBL | A0A1U7Y567 | 1e-112 | A0A1U7Y567_NICSY; axial regulator YABBY 5-like | ||||
STRING | XP_009798278.1 | 1e-112 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 6e-46 | YABBY family protein |
Publications ? help Back to Top | |||
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