PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf23282g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 27790.8 Da PI: 8.3497 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Niben101Scf23282g01002.1 94 FECQYCFKQFANSQALGGHQNAH 116 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.29E-6 | 92 | 121 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-5 | 92 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.427 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTKDVSSTFH SPLYNNGENY ESSSKSCVEN KRLKLFGFEL EPSPKIQKNS KEDQGDHESV 60 NSSSASTVSS GRDQEKLLPA SNSKPDSEEI MKKFECQYCF KQFANSQALG GHQNAHKKER 120 MRKKRLQLQA RKASLSCYLQ PFQNNNNNIS YQFYDPNSFF GNSDQFTVYD ESQISFSPYD 180 QESQVLVGKW PFQQDSCMFT LTHGEKSREK YSRPAAVMKP ETLPNSASKQ KCNSLDLQLG 240 LSLH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789685.1 | 1e-161 | PREDICTED: zinc finger protein 5-like | ||||
Refseq | XP_016455528.1 | 1e-161 | PREDICTED: zinc finger protein 5-like | ||||
TrEMBL | A0A1S3YTQ9 | 1e-160 | A0A1S3YTQ9_TOBAC; zinc finger protein 5-like | ||||
TrEMBL | A0A1U7XT84 | 1e-160 | A0A1U7XT84_NICSY; zinc finger protein 5-like | ||||
STRING | XP_009789685.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5136 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 4e-19 | zinc finger protein 5 |