PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf23248g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 26459.3 Da PI: 9.3471 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.6e-17 | 35 | 114 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ lt+GW++F a++L egD++vF+l Niben101Scf23248g00010.1 35 FMKPMIRSNVTAGFWLSLPRFFCQLHF--PRHDTTVTLVDESQEEFKTKYLAERNG----LTGGWRGFSLAHNLVEGDVLVFQLF 113 89*********************9996..456789***************555555....***********************75 PP S CS B3 86 g 86 + Niben101Scf23248g00010.1 114 R 114 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.23E-21 | 28 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 28 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.41E-22 | 33 | 121 | No hit | No description |
Pfam | PF02362 | 6.4E-15 | 35 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-13 | 35 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.616 | 35 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAMMQNLYGR FDLASSAKYR AEEVLSRLST KYPSFMKPMI RSNVTAGFWL SLPRFFCQLH 60 FPRHDTTVTL VDESQEEFKT KYLAERNGLT GGWRGFSLAH NLVEGDVLVF QLFRFCKLKV 120 RTNFLFTDVH IVQVYIVRAN YLAEVDAALV LLHLDGHQKQ IDPAVHQMQD NRSTKQAGIK 180 RQRFSSRRDE DDYSAEENML HKHSHPRNML KDLDLPSKGP KLDTFSCI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258000.1 | 1e-142 | PREDICTED: B3 domain-containing protein At3g19184-like isoform X2 | ||||
TrEMBL | A0A1J6IMH7 | 1e-142 | A0A1J6IMH7_NICAT; B3 domain-containing protein | ||||
STRING | XP_009612764.1 | 1e-138 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13184 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-39 | B3 family protein |