PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf18484g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 171aa MW: 18917.5 Da PI: 8.6877 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 81 | 3.6e-25 | 8 | 76 | 4 | 73 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelle 73 ssse+vCyvqCnfCnt lavsvP +s++++vtvrCGhC++l+s+n+ + l+ ++ l++s e+ + Niben101Scf18484g01002.1 8 SSSSERVCYVQCNFCNTNLAVSVPCSSMMTIVTVRCGHCANLFSLNIGSLLHSLPLQD-LQRSNIEDASK 76 6899***************************************************998.67776666544 PP | |||||||
2 | YABBY | 119.6 | 4.8e-37 | 93 | 145 | 118 | 170 |
YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl Niben101Scf18484g01002.1 93 APEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 145 69*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-59 | 10 | 145 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-8 | 84 | 138 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.8E-5 | 94 | 137 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSLDITYSSS SERVCYVQCN FCNTNLAVSV PCSSMMTIVT VRCGHCANLF SLNIGSLLHS 60 LPLQDLQRSN IEDASKACGS SSSTNYHRFS AIAPEKRQRV PSAYNRFIKE EIQRIKASNP 120 DITHREAFST AAKNWAHFPH IHFGLKLEGN KQAKLDHAVA GEGPQKSIGL Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234445.1 | 1e-117 | PREDICTED: axial regulator YABBY 5-like isoform X4 | ||||
Swissprot | Q9XFB0 | 1e-66 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J6KYN5 | 1e-114 | A0A1J6KYN5_NICAT; Putative axial regulator yabby 2 | ||||
STRING | XP_009792033.1 | 1e-110 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 6e-69 | YABBY family protein |
Publications ? help Back to Top | |||
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