PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14521g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 342aa    MW: 38799.9 Da    PI: 10.4188
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14521g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.85.4e-40822332135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                               ++k+ r ski T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WL++++k ai elt+ s+ + +++  a++ +ss +  
  Niben101Scf14521g00001.1  82 PKKRERCSKILTSQGPRDRRVRLSIAVARKFFDLQEMLGFDKPSKTLDWLFTNSKLAIEELTNWSTHQDHDSnIAGATKSSCD-- 164
                               6899***********************************************************96666644442222222222.. PP

                       TCP  86 ssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                                 +                    +++++ ak+kk+ k++a+ l+l + esrakar rarert +km  +++
  Niben101Scf14521g00001.1 165 --EiakdyasecedpvittnkglERNPKRAKEKKEVKDEATDLALVArESRAKARTRARERTIKKMLSRTE 233
                               ..0112234456666777888887777888999999999999999888******************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.79582142IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-3783228IPR005333Transcription factor, TCP
PROSITE profilePS5137010.125210227IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MFPASNSTGN PPPHPSLSFH SSSPFLGLNG SQILLHHYQT QLSSHHFAKN MTLSANNIIN  60
SPNYNQKHRD NSIRSFPINK KPKKRERCSK ILTSQGPRDR RVRLSIAVAR KFFDLQEMLG  120
FDKPSKTLDW LFTNSKLAIE ELTNWSTHQD HDSNIAGATK SSCDEIAKDY ASECEDPVIT  180
TNKGLERNPK RAKEKKEVKD EATDLALVAR ESRAKARTRA RERTIKKMLS RTETSQRSTS  240
QLIKSSSFLR KDIKEMEEQF CLNKLQASQQ VANKEIIQGF GNFKVAGNSG THVTATKSNM  300
GTMIDCQVVN YFSYLLQQSH NPFLQGFLIW TFMNTSRRET GV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267653.11e-179PREDICTED: transcription factor CYCLOIDEA-like isoform X2
TrEMBLA0A314KY361e-178A0A314KY36_NICAT; Transcription factor tcp12
STRINGXP_009803760.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-23TCP domain protein 12