PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14115g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 436aa    MW: 46045.6 Da    PI: 6.5215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14115g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09308333126
                               XXXXCHHHCHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKka 26 
                               e+elkr+rrkq+NRe+ArrsR+RK+ 
  Niben101Scf14115g01004.1 308 ERELKRQRRKQSNRESARRSRLRKQV 333
                               89**********************96 PP
2bZIP_125.82.4e-083573952563
                               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               +ae++eL++++++L +eN++L+ e+++++ e+++l +++
  Niben101Scf14115g01004.1 357 QAECDELAQRAEVLREENSSLRAEVNRIRSEYEQLLAQN 395
                               89*********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.8E-31198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.2E-51137275No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-18301394No hitNo description
PfamPF001703.4E-7308334IPR004827Basic-leucine zipper domain
SMARTSM003384.2E-15308397IPR004827Basic-leucine zipper domain
CDDcd147021.51E-19313388No hitNo description
PROSITE patternPS000360315330IPR004827Basic-leucine zipper domain
PfamPF001701.3E-6357395IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGSSEMDKSS KEAKEAKEPK TPNSQEQAST TTASSVNPDW SGFQAYSPMP PHGFMASSPQ  60
AHPYMWGVQQ FMPPYGTPPH PYVAMYPHGG IYAHPSMPPG SYPFSPFAMP SPNGVAEAAV  120
SNAGNVEVDG KSSEGKEKLP IKRSKGSLGS LNMITGKNNG PGKTSGASTN GVYSKSAESG  180
SEGSSEGSDA NSQNVGIESP MNSGGGQDSA DTSQNGNAAH GSQNGGTGGA PHSMINQTMA  240
IVPISAAAAG GIPGPTTNLN IGMDYWGAAT ASSIPAIHGN VPSASVAGGL VAAGSRDSAQ  300
SHMWIQDERE LKRQRRKQSN RESARRSRLR KQVQIILQFF PFSIIINPDS TSPFVSQAEC  360
DELAQRAEVL REENSSLRAE VNRIRSEYEQ LLAQNASLKE RLGEVPGEDD PRTSRDDQLL  420
GKKVQHSSQK ESEQGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330RRSRLRK
2324331RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625983.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_019241608.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-161BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1J6K8X60.0A0A1J6K8X6_NICAT; Bzip transcription factor 16
STRINGXP_009625983.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-132basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]