PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13926g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 398aa MW: 43440.9 Da PI: 9.7308

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13926g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.4	7.6e-14	320	370	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r +r++kNRe+A rsR+RK+a++ eLe +v++L++ N++L k+ e ++ Niben101Scf13926g00004.1 320 RRRKRMIKNRESAARSRARKQAYTLELEAEVEKLKEINEELHKKQAEFIEM 370 689**************************************9887666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-11	316	381	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	318	363	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-11	320	372	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-13	320	375	No hit	No description
SuperFamily	SSF57959	3.66E-10	320	368	No hit	No description
CDD	cd14707	2.73E-23	320	374	No hit	No description
PROSITE pattern	PS00036	0	323	338	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGSYMNFKNF ADPPQTESNG GMPIGSGNFP LARQSSVYSL TFDELQSTCG LGKDLGSMNL 60 EDLLKNIWTA EESNVVASAA GVGNENTAGE NLQRQGSLTL PRTLSQKTVD EVWRDFQKET 120 TVSSKYGSGT EWPNLGQRQS TLGEMTLEEF LVRAGVVRED MQLTGSSNDV RFTGGLSQPC 180 TNNNCLNIVF QQPTQNPGLV SATSSQQKPN VAFASPMQLG TNGQLANTGA RTPVISMSSP 240 SVNTSTVVQG SVMQSGVKGL AGSLNGVTPA KRGSPGNQLS PDMIAKKELD RSSLSPSPYA 300 FSEGGKGRRS CNSLEKVVER RRKRMIKNRE SAARSRARKQ AYTLELEAEV EKLKEINEEL 360 HKKQAEFIEM QKNQLMDKMN MPRGNKLRCL RRTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGSYMNFKNF ADPPQTESNG GMPIGSGNFP LARQSSVYSL TFDELQSTCG LGKDLGSMNL  60
EDLLKNIWTA EESNVVASAA GVGNENTAGE NLQRQGSLTL PRTLSQKTVD EVWRDFQKET  120
TVSSKYGSGT EWPNLGQRQS TLGEMTLEEF LVRAGVVRED MQLTGSSNDV RFTGGLSQPC  180
TNNNCLNIVF QQPTQNPGLV SATSSQQKPN VAFASPMQLG TNGQLANTGA RTPVISMSSP  240
SVNTSTVVQG SVMQSGVKGL AGSLNGVTPA KRGSPGNQLS PDMIAKKELD RSSLSPSPYA  300
FSEGGKGRRS CNSLEKVVER RRKRMIKNRE SAARSRARKQ AYTLELEAEV EKLKEINEEL  360
HKKQAEFIEM QKNQLMDKMN MPRGNKLRCL RRTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760513.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6
Refseq	XP_016441338.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X2
Swissprot	Q9M7Q4	2e-85	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1S3XN38	0.0	A0A1S3XN38_TOBAC; ABSCISIC ACID-INSENSITIVE 5-like protein 6 isoform X2
TrEMBL	A0A1U7V2A8	0.0	A0A1U7V2A8_NICSY; ABSCISIC ACID-INSENSITIVE 5-like protein 6
STRING	XP_009760513.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	6e-79	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]