PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12623g00009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 407aa MW: 45489.3 Da PI: 9.2442

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12623g00009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	120.1	5.4e-37	30	196	130	291
GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk.kvkkesaderskaekksidl...vlng..vslDes.t 207 + a pi++aa++ +++ ++k +++++k k++k + +k k ++ + k + + k++k+++d+ + +++ Niben101Scf12623g00009.1 30 KPYAAVPIRSAAPTGEQHINVKVKAKQQKVKKNKIS--TKYCVKLHRnSLKISLLP--LKEPKEKLDVeraRQQRieIQFTVKlL 110 455566777776666666555543333333333322..222222222022222211..222222222211111110022222202 PP GAGA_bind 208 lPvPvCsCtGalrqCYkWGnG..GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 l +C ++ q ++ +G GWqS+CCttt+SvyPLP+++ ++g R++grKm + a++klL +LaaeG dlsnpvDLk+hWA Niben101Scf12623g00009.1 111 LIFLACHRHFVPVQVFRCKCGvyGWQSSCCTTTLSVYPLPMNPSKPGNRLGGRKMTNRAYTKLLLRLAAEGRDLSNPVDLKNHWA 195 33446666677777776555444************************************************************** PP GAGA_bind 291 k 291 k Niben101Scf12623g00009.1 196 K 196 9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.6E-10	1	196	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.6E-35	38	196	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MIFLTPRILK DIDMVVDNCS PTTKVGSKSK PYAAVPIRSA APTGEQHINV KVKAKQQKVK 60 KNKISTKYCV KLHRNSLKIS LLPLKEPKEK LDVERARQQR IEIQFTVKLL LIFLACHRHF 120 VPVQVFRCKC GVYGWQSSCC TTTLSVYPLP MNPSKPGNRL GGRKMTNRAY TKLLLRLAAE 180 GRDLSNPVDL KNHWAKQFGK GLGLCSLNWS CSSAGNDLLV EVSDLQTDNG LEETCSIVAT 240 REISMLQHLL SNFTIEFGGE VAQMALHIDE LIQSVKLPIH LQDSYLQITV VISEINVFES 300 GFPPFGGSAA PPNTLVNLLM KVLFPHPESA AKPITTVFSS SADEHRERDR IMEYPLPSLL 360 LSDELKFKGI QDDEVMMFVM DKGMGKALVV IYCSLDIDMK RGSRMMA

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MIFLTPRILK DIDMVVDNCS PTTKVGSKSK PYAAVPIRSA APTGEQHINV KVKAKQQKVK  60
KNKISTKYCV KLHRNSLKIS LLPLKEPKEK LDVERARQQR IEIQFTVKLL LIFLACHRHF  120
VPVQVFRCKC GVYGWQSSCC TTTLSVYPLP MNPSKPGNRL GGRKMTNRAY TKLLLRLAAE  180
GRDLSNPVDL KNHWAKQFGK GLGLCSLNWS CSSAGNDLLV EVSDLQTDNG LEETCSIVAT  240
REISMLQHLL SNFTIEFGGE VAQMALHIDE LIQSVKLPIH LQDSYLQITV VISEINVFES  300
GFPPFGGSAA PPNTLVNLLM KVLFPHPESA AKPITTVFSS SADEHRERDR IMEYPLPSLL  360
LSDELKFKGI QDDEVMMFVM DKGMGKALVV IYCSLDIDMK RGSRMMA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13714	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	2e-27	basic pentacysteine 7