PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10688g04007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21702.6 Da PI: 8.2307 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 219.3 | 1.1e-67 | 7 | 166 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 +se++Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a + +++s ++ ++l+v + + ++ + Niben101Scf10688g04007.1 7 IASEKLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFHSSSSSSSWQD------IHHLQVPNYTAPEYRMDF 85 689********************************************99999998887333......233444455555555555 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+++ ++ ++ + +++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Niben101Scf10688g04007.1 86 GSSTKCNNRITMRTPSTNNIHDERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 166 55555555556666666777766789*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-71 | 8 | 166 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.55E-8 | 111 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 114 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MASCIDIASE KLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFHSSS 60 SSSSWQDIHH LQVPNYTAPE YRMDFGSSTK CNNRITMRTP STNNIHDERI VNRPPEKRQR 120 VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP HIHFGLILES NNQAKLSYGN 180 APITQAILNI HGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785258.1 | 1e-123 | PREDICTED: axial regulator YABBY 5 | ||||
Refseq | XP_016457963.1 | 1e-123 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 3e-85 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3Z0N6 | 1e-122 | A0A1S3Z0N6_TOBAC; axial regulator YABBY 5-like | ||||
TrEMBL | A0A1U7X334 | 1e-122 | A0A1U7X334_NICSY; axial regulator YABBY 5 | ||||
STRING | XP_009785258.1 | 1e-122 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-86 | YABBY family protein |
Publications ? help Back to Top | |||
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