PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09716g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 479aa    MW: 52290.8 Da    PI: 6.6334
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09716g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10191232546
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                               k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  Niben101Scf09716g02002.1 191 KSLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQELK 232
                               788*************************99888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.1E-8183234No hitNo description
SMARTSM003384.9E-7187252IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415189233IPR004827Basic-leucine zipper domain
PfamPF001709.5E-7191232IPR004827Basic-leucine zipper domain
CDDcd147086.30E-22191242No hitNo description
SuperFamilySSF579591.5E-6191233No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF141441.1E-30276349IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MQAFKAAVLP AVTLNNNNNN NSNMYCHSSL YLRGDEATRH AAARFADIGE LEQSTGFPQE  60
DAVDLSRSSV YGEMRPNNVA VSIGSTEMGS SETGGVEAGG RFILHKAQTA MVGGGGGVGG  120
LVGGGIVPLG NGLFENWADS GIADHSHSQQ TDTSTDVDTD ERNHQGQGVQ HGALMAVDSI  180
DQSKVKHGDQ KSLRRLAQNR EAARKSRLRK KAYVQQLETS RLKLSQLEQE LKRARQQGIF  240
IANGYAGDQS LSAGGNGALA FDMDYARWLE DHQRLINDLR SAVNSHRGDN ELRLLVDGVM  300
LHYDEIFKLK SVGAKSDVFH MLSGMWKTPA ERCFMWLGGF RSSELLKILG NHLEPLTEQQ  360
LMGICNLQQS SQQAEDALSQ GMEALQQSLV DTLSSTSLGP TGSGNVADYM GLMAIAMGKL  420
ATLENFLYQA DLLRQQTLQQ LHRILTTRQA AQALLVISDY MSRLRALSSL WLARPKDQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799344.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X3
RefseqXP_016450867.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotQ415581e-174HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1S3YG110.0A0A1S3YG11_TOBAC; transcription factor HBP-1b(C38)-like isoform X1
TrEMBLA0A1U7YJD40.0A0A1U7YJD4_NICSY; transcription factor HBP-1b(C38)-like isoform X3
STRINGXP_009621407.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-136bZIP family protein