PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09554g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 457aa MW: 50918.1 Da PI: 6.4484 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.5e-06 | 120 | 141 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+rtH Niben101Scf09554g00002.1 120 ICKECGKEFSSTQALAGHLRTH 141 5********************9 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.6e-05 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H Niben101Scf09554g00002.1 151 HICEKCGKGFGSTRALYGHMKVH 173 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-5 | 4 | 32 | No hit | No description |
SMART | SM00355 | 0.059 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.133 | 119 | 146 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 119 | 141 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.5E-8 | 120 | 143 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.43E-10 | 120 | 173 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 121 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-6 | 121 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene3D | G3DSA:3.30.160.60 | 6.9E-4 | 146 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 0.004 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.115 | 151 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0042 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-8 | 380 | 404 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 380 | 402 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 382 | 402 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MEETQEQKHK CRFCNQSCSS GRSLGGHMRI HLDLISAEKK QKIKAEKKMG SEEEEKGDNH 60 FENLSISDQS DRSMSQEKVN NISTNDVDDI DSVGYGLREN PRKSWRGSEL KLGSLKTQII 120 CKECGKEFSS TQALAGHLRT HSKKGTTEES HICEKCGKGF GSTRALYGHM KVHVKRSRDD 180 QESESSKQSL SDFETVCPIR KKRSKIKYKT DANPESSSAI SEVEETEEAA KNLMMLSCGV 240 RDWDEYLSMS KPLKKENAKS LSQAGCSDSG CVDGYEKKCE NEVINNEFSG KLMMLNTEIT 300 RVCYSTTILG LDNDPSEDLA FLNSCSVKNA GVDFQVLNQK TNFVSDMVNS QLECIDDSPV 360 ELGTIGVIRT SPEPIKTKDH KCPICFKIFP SGQSLGGHKS AHYAGFNESK RKETMVKKLE 420 DLADNHRSFD LNNPVNVVDG GEKDVVELNL WWVGGSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757607.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
Refseq | XP_016446098.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A314KUK4 | 0.0 | A0A314KUK4_NICAT; Uncharacterized protein | ||||
STRING | XP_009757607.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26590.1 | 7e-17 | C2H2-like zinc finger protein |