PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09065g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 454aa    MW: 52777.1 Da    PI: 8.3116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09065g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.2e-212353633128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                               +G+rFhPt+ el+ ++Lk+ ++g+ l+ e + ++ +diy    Pw++  ++ ++ eek  y F++ +kk+++ +r +r+ + g+W
  Niben101Scf09065g00002.1 235 MGVRFHPTEAELI-NFLKRFLKGELLQSECHnFQLADIYGDqPPWEIFeANSDHpEEKVRYIFTRLKKKKKEHSRVRRTCAYGTW 318
                               7************.9********9977755559999***87368***6233333244566************************* PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k +    ++++ kg++vg ++ + f + +++  ++  W+m ey++
  Niben101Scf09065g00002.1 319 KGQTGIDPIKKGKGTVVGFRRCFKFQSRSKEGEHNKIWLMREYSV 363
                               *8888899**99*************977777777888******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.72574108IPR002885Pentatricopeptide repeat
PfamPF015359.9E-476103IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-476103IPR002885Pentatricopeptide repeat
PfamPF015357.8E-4108133IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015108133IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.338109135IPR002885Pentatricopeptide repeat
SuperFamilySSF1019418.5E-26220385IPR003441NAC domain
PROSITE profilePS5100525.034233386IPR003441NAC domain
PfamPF023651.9E-13235363IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MQRQAIPFDC LTILFTLRSC TQLPNLLLIC HLHAHLLKLG FNIHVYVATS LLYAYAGTSL  60
ECAYKLFDEI PMRNAVMWNT IITCFSCSGD VKGARKRFDQ MPLRDLASWS VMIVGYMNNG  120
HREEGVALFQ EMVMFEQLKI DQVTIGPILT GCFEMGSIGL LLGKSVHERV IVRVMNRPKN  180
DGGVYTLISD LYFLGGKRAK SERMRQLMLY QHQEKETTTI YTMSMVPAAR RGCIMGVRFH  240
PTEAELINFL KRFLKGELLQ SECHNFQLAD IYGDQPPWEI FEANSDHPEE KVRYIFTRLK  300
KKKKEHSRVR RTCAYGTWKG QTGIDPIKKG KGTVVGFRRC FKFQSRSKEG EHNKIWLMRE  360
YSVGDDFFRE NNIPKEDIVV CRIKKNIRSM KNHWVNMEEQ DVPKVIEAMY EDYCTTVQPE  420
TICQAADQRQ VNDWSNYQQE FNWADDMLIG IDDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D7e-13119243198PLS9-PPR
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461013.11e-148PREDICTED: NAC domain-containing protein 53-like
TrEMBLB3VK721e-150B3VK72_TOBAC; NAC transcription factor
STRINGXP_009793650.11e-146(Nicotiana sylvestris)
STRINGXP_009794658.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-14NAC domain containing protein 2