PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08665g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 300aa    MW: 34590.2 Da    PI: 4.3291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08665g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.87.9e-14109942128
                       NAM  42 vePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvm 123
                                +Pw++ +   + ++++  yf ++++k+++t kr +r++ +g+Wk + k ++ ++ kg+l+g  k+L +   +++++ ++ +W+m
  Niben101Scf08665g00007.1  10 KKPWQIFEayDHGNNNNTRYFITPQKKEKPTWKRVSRTVGKGTWKPQNKGRDAFDDKGRLMGYVKSLKYIpVNKSSNNVNGEWLM 94 
                               58***96412333345577***************************************************545778889****** PP

                       NAM 124 heyrl 128
                                ey+l
  Niben101Scf08665g00007.1  95 TEYSL 99 
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.2171122IPR003441NAC domain
SuperFamilySSF1019418.76E-1910122IPR003441NAC domain
PfamPF023653.7E-61199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQVAELYADK KPWQIFEAYD HGNNNNTRYF ITPQKKEKPT WKRVSRTVGK GTWKPQNKGR  60
DAFDDKGRLM GYVKSLKYIP VNKSSNNVNG EWLMTEYSLF DRYLAAREIK NKGFVICKIK  120
KKGKPGDKKK GNNLDEVVKD EIMKDIEESI NAVLEEDVQV EDNGIKSSGT IAKDDQENHI  180
IQHVEGDQVR DHVLGLLDSQ DDDIVDLDDH EENVEDCVDE EDEVHVHLLE EYIDSVLQSE  240
DVPAEDNGII MSNDIAKDDQ ENMEYKVEDH QHATLWASAE DVDLDTINFY LPEDEEIHFC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762991.11e-167PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6JUZ11e-174A0A1J6JUZ1_NICAT; Nac domain-containing protein 43
STRINGXP_009762991.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.18e-07NAC-domain protein 101