PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08635g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 266aa MW: 29965 Da PI: 7.8338 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.1 | 4.9e-18 | 182 | 216 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l Niben101Scf08635g02001.1 182 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 216 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 9.5E-81 | 2 | 265 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.0E-15 | 176 | 226 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.477 | 176 | 212 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 177 | 240 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.5E-14 | 178 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.87E-12 | 181 | 228 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 182 | 207 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.2E-16 | 182 | 216 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDVYGAEVFR IDDLLDLSND DIFSSSTGSS SNKTTNFDLN HHYHPPHSDN INLAAATYYD 60 PLIPNCADFT DKLCVPSDDV AELEWLSNFV EDSSNNYPSN SLIGTINLNS NNTSFHSKSR 120 SKRSRATTAN TSWASSLQQA HHKPADEEPN RNPQHSNNHN TMKPKKESRG RSCEMSDIPR 180 KCTHCASEKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TQHSNSHRKV 240 MELRRQKEVQ QQSQQQGMYG HHFQVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233477.1 | 0.0 | PREDICTED: GATA transcription factor 4-like | ||||
Swissprot | O49741 | 8e-68 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A1J6J221 | 0.0 | A0A1J6J221_NICAT; GATA transcription factor | ||||
STRING | XP_009591827.1 | 1e-172 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5776 | 19 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 3e-60 | GATA transcription factor 2 |
Publications ? help Back to Top | |||
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