PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07509g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 405aa    MW: 46031.3 Da    PI: 5.2076
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07509g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.6e-35141052102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+ye+++d++++ ++sws++++sf+v ++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F
  Niben101Scf07509g01001.1  14 FIAKTYEMVDDPSTDPIVSWSSTNKSFIVRNPPDFARELLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDF 89 
                               9***************************************************************9998.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                +g+ +ll++i+r+k 
  Niben101Scf07509g01001.1  90 IRGEPHLLRNIHRRKP 105
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDEAPCSANA LPPFIAKTYE MVDDPSTDPI VSWSSTNKSF IVRNPPDFAR ELLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGEPHLLRNI HRRKPVHSHS VQNLHSVSSA  120
LTESERQGYK EDIEKLKHVN QSLHLELQGH KQDYQGLEMQ MQVFAECVQR VKHRQRNMLS  180
TLARTINKPG LALSLMPQLG MNERKRRLPG NSFLCNETGL EDNQASSSQD STRENMDPTS  240
DLTLNKELLD LLESSLTFWE NILHDIDQNG MRRSSSVDLD ASISCTDSPA ISYSQLNVDI  300
GSKISGIDMN SEPNGITVPE VSLKEDQVVV IGTATNRPTG VNDVFWEQFL TENPGSTEFD  360
VKPEREDIDS QSESKTVEHG KSWWKMKSVN SLTEQLGHLT PAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-231110317120Heat shock factor protein 1
5d5u_B1e-231110326129Heat shock factor protein 1
5d5v_B1e-231110326129Heat shock factor protein 1
5d5v_D1e-231110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253075.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253077.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253078.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253079.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253080.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A1J6IT180.0A0A1J6IT18_NICAT; Heat stress transcription factor a-4a
STRINGXP_009785427.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-104heat shock transcription factor A4A