PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06387g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 390aa MW: 43379.9 Da PI: 4.3895

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06387g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	207.4	7.9e-64	144	386	1	253
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.f 84 lv+ L++c +av+ ++l+la++l+ ++e+ +++ +m+++a+yf+ AL +r+++ +l ++++ s ++ +++++ + Niben101Scf06387g01001.1 144 LVKILMACGKAVQRNNLNLADSLVRLIREQTASQFGAMKKVATYFADALDQRIQG--MNLEDIMEFSCYRD-------NVMQMrL 219 6789*************************************************..45555555555442.......2223339 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169 +e+ P+l+f++ taN+aIl+a+++++rvHiiDf+++qG QW+aL+ +a Rp+gpp +R+ g+gsp+ +++++++++++L++f Niben101Scf06387g01001.1 220 HEIRPYLEFAYSTANRAILDAFANSSRVHIIDFSLNQGPQWLALMLDFALRPGGPPAIRLIGIGSPD--NTDAIRQLKWKLTEFS 302 9************************************************************76..9*********** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns 250 + +gv+fef +++++l+d+++++L++++ E +aVn++++lh+ll ++++e+ vL+ +k++ Pk+v+++e a+h + Niben101Scf06387g01001.1 303 DIFGVEFEFCGIMVDSLADVHTSRLDIRQsnYEEVAVNSIFELHHLLYTPGEIEK----VLNSIKEMHPKIVTIIEATASHlpRD 383 ***********************99989***********99999999....****************99986555 PP GRAS 251 esF 253 e+F Niben101Scf06387g01001.1 384 EKF 386 555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.239	118	390	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-61	144	386	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MSSGNLSTDT FMEDGESFVS NTDAVINGIS DISDLTLSLI SDPNIPNSSD SSTSIDDYLQ 60 QISTAAYGCD DMIVSSGATF RKFNSSPDFR VFSRNNINAI CNNYSDKVAE EGSAESSNRM 120 RSEDGLELCL GLSIGSEVVN EELLVKILMA CGKAVQRNNL NLADSLVRLI REQTASQFGA 180 MKKVATYFAD ALDQRIQGMN LEDIMEFSCY RDNVMQMRLH EIRPYLEFAY STANRAILDA 240 FANSSRVHII DFSLNQGPQW LALMLDFALR PGGPPAIRLI GIGSPDNTDA IRQLKWKLTE 300 FSDIFGVEFE FCGIMVDSLA DVHTSRLDIR QSNYEEVAVN SIFELHHLLY TPGEIEKVLN 360 SIKEMHPKIV TIIEATASHL PRDEKFPSLF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MSSGNLSTDT FMEDGESFVS NTDAVINGIS DISDLTLSLI SDPNIPNSSD SSTSIDDYLQ  60
QISTAAYGCD DMIVSSGATF RKFNSSPDFR VFSRNNINAI CNNYSDKVAE EGSAESSNRM  120
RSEDGLELCL GLSIGSEVVN EELLVKILMA CGKAVQRNNL NLADSLVRLI REQTASQFGA  180
MKKVATYFAD ALDQRIQGMN LEDIMEFSCY RDNVMQMRLH EIRPYLEFAY STANRAILDA  240
FANSSRVHII DFSLNQGPQW LALMLDFALR PGGPPAIRLI GIGSPDNTDA IRQLKWKLTE  300
FSDIFGVEFE FCGIMVDSLA DVHTSRLDIR QSNYEEVAVN SIFELHHLLY TPGEIEKVLN  360
SIKEMHPKIV TIIEATASHL PRDEKFPSLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-30	151	379	26	255	Protein SCARECROW
5b3h_A	7e-30	151	379	25	254	Protein SCARECROW
5b3h_D	7e-30	151	379	25	254	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019241513.1	0.0	PREDICTED: DELLA protein GAI-like
Swissprot	Q7Y1B6	1e-86	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A1J6K2Q1	0.0	A0A1J6K2Q1_NICAT; Della protein gai
STRING	XP_009788345.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16964	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	8e-74	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]