PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06245g01015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 570aa MW: 64633.3 Da PI: 4.406 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.1 | 4.1e-54 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 l+pGfrFhPtdeelv +yL++k++g++++ i+++diykvePwdLp k ++k+++ ewyfFs dkky +g r+nrat++gyW Niben101Scf06245g01015.1 10 LAPGFRFHPTDEELVRYYLRRKITGRPIKS-APISDIDIYKVEPWDLPgKsRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYW 93 579************************999.78***************6347777888*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkd++v ++k+++vg+kktLv+++grapkg++t+Wvmheyrl Niben101Scf06245g01015.1 94 KTTGKDRAVRRTKSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 138 *******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-61 | 9 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.937 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-28 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGRPIKSA PISDIDIYKV EPWDLPGKSR 60 LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVRRTKSQVV GMKKTLVYHS 120 GRAPKGQRTN WVMHEYRLID EELDREGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE 180 WEDDDLQVLP KDEAAEEFVF DDDIYLDGIE LDQVIISDIS VAVPFILCMC SNIFEISDHV 240 NMILGTETTL NSAPLPLNYC YGENVSSEET NNSSDAQNWL QQPDELKPID LAVQQNVDVV 300 PVMPEYIGES IKNVNSEDLD YLLNEPTVNT TDDFQFKEEA FLEANDFSNP IEVDSSGFDM 360 LEEYLTFFDA NNDFQNMGFD PSVLFGNDDQ ISDQALLAEK NIGEVTQQFI APNEWLGENK 420 NDFASSSKLE PTKFGSDRQY PFMKKASQML GNIHAPPAFA SEFPTKDATL RLNSWSRSSS 480 SVQVTGGFQI RDVTAGSNET RWPLGKHADY SIILSFGISQ RSDDSAMESF YSIHPGKTTS 540 IISRGWFYYL FFSFLMLCMS FKIGTIICAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-45 | 9 | 167 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-45 | 9 | 167 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-45 | 9 | 167 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-45 | 9 | 167 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 9 | 167 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-45 | 9 | 167 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-45 | 9 | 167 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599412.1 | 0.0 | PREDICTED: NAC domain-containing protein 53-like isoform X1 | ||||
TrEMBL | A0A1J6KMA5 | 0.0 | A0A1J6KMA5_NICAT; Nac domain-containing protein 78 | ||||
STRING | XP_009599412.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3141 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-127 | NAC domain containing protein 2 |