PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06045g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 318aa MW: 35683.9 Da PI: 9.4258 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3.1e-19 | 178 | 211 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp g+ktLCnaCG+++rk + Niben101Scf06045g00014.1 178 CADCNTTKTPLWRSGPKGPKTLCNACGIRQRKAR 211 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.1E-17 | 172 | 223 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-12 | 176 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.1E-16 | 176 | 211 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.558 | 176 | 208 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.87E-14 | 177 | 209 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 178 | 211 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MTPADHITNS TIPPPFPFVL NNEDHDLNHS LVSPYKNYQG SSSSSYSSPY QFFFNSTTNQ 60 NRTGYYHRDE YYTPPHQPEV DNEGGSYDVE KKNKVGSGLK LTLWKREDKY HENQNEKNPV 120 KWISSEIKTS DRASMENTTS NAYIKLKLED QKQQPSYPLE STDYSSNNSN NIVPIRVCAD 180 CNTTKTPLWR SGPKGPKTLC NACGIRQRKA RRAMAVAAEA TAANGETLTT ETSSSSMKKK 240 VKHLHKEKIT KVNVTLPYKK RCKLGQSSSS NTAPKKLGNF EDFLINLTNN LALHQIFPQD 300 EKDAAILLMA LSSGLVHG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768461.1 | 1e-170 | PREDICTED: putative GATA transcription factor 22 | ||||
Refseq | XP_016479424.1 | 1e-170 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | A0A1S4ARW5 | 1e-169 | A0A1S4ARW5_TOBAC; putative GATA transcription factor 22 | ||||
TrEMBL | A0A1U7VU36 | 1e-168 | A0A1U7VU36_NICSY; putative GATA transcription factor 22 | ||||
STRING | XP_009768461.1 | 1e-169 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 2e-21 | cytokinin-responsive gata factor 1 |