PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05620g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 305aa    MW: 34304.4 Da    PI: 9.533
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05620g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19165198134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C+ C+ttkTplWR+gp g+ktLCnaCG+++rk +
  Niben101Scf05620g00004.1 165 CADCNTTKTPLWRSGPKGPKTLCNACGIRQRKAR 198
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-17159210IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558163195IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-16163198IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-12163199No hitNo description
CDDcd002027.11E-14164196No hitNo description
PfamPF003209.5E-17165198IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
PPFPFVLNNE DHDLNHSLVS PYKNYQGSSS SSYSSPYQFF FNSTTNQNRT GYYHRDEYYT  60
PPHQPEVDNE GGSYDVEKKN KVGSGLKLTL WKREDKYHEN QNEKNPVKWI SSEIKTSDRA  120
SMENTTSNAY IKLKLEDQKQ QPSYPLESTD YSSNNSNNIV PIRVCADCNT TKTPLWRSGP  180
KGPKTLCNAC GIRQRKARRA MAVAAEATAA NGETLTTETS SSSMKKKVKH LHKEKITKVN  240
VTLPYKKRCK LGQSSSSNTA PKKLGNFEDF LINLTNNLAL HQIFPQDEKD AAILLMALSS  300
GLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479424.11e-162PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4ARW51e-160A0A1S4ARW5_TOBAC; putative GATA transcription factor 22
STRINGXP_009768461.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-21cytokinin-responsive gata factor 1