PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05078g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 255aa    MW: 29405.2 Da    PI: 9.9104
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05078g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.65.2e-49141381128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrF+Ptdeelvv+yLk+kv + +l++ ++++e++i+k++PwdLp      e+e yfFs+r+ ky++g+r+nrat+sgyWka
  Niben101Scf05078g00004.1  14 LPPGFRFRPTDEELVVQYLKRKVLSFPLPA-SIMPELEIHKSDPWDLPGD---LEEERYFFSTREVKYPNGNRSNRATNSGYWKA 94 
                               79****************************.89***************54...46799*************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg dk+++s  +++lvglkktLvfy+g++p+g +t+W+mheyrl
  Niben101Scf05078g00004.1  95 TGIDKQIVSCkGQQLVGLKKTLVFYRGKSPHGCRTNWIMHEYRL 138
                               *******99746777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-589165IPR003441NAC domain
PROSITE profilePS5100557.1914165IPR003441NAC domain
PfamPF023658.9E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEKLSFVKNG VLRLPPGFRF RPTDEELVVQ YLKRKVLSFP LPASIMPELE IHKSDPWDLP  60
GDLEEERYFF STREVKYPNG NRSNRATNSG YWKATGIDKQ IVSCKGQQLV GLKKTLVFYR  120
GKSPHGCRTN WIMHEYRLPN LQTSSIHPNN KLTQENWVLC RIFLKRRDGK NKEEDIKHEV  180
FNSRNTRGSS GNKKKAVFYD FMGREREDLN GVIPASTSFS GSSGITELTA NESDDHEESS  240
SSFNSFTTFR RKQCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-521216615166NO APICAL MERISTEM PROTEIN
1ut4_B3e-521216615166NO APICAL MERISTEM PROTEIN
1ut7_A3e-521216615166NO APICAL MERISTEM PROTEIN
1ut7_B3e-521216615166NO APICAL MERISTEM PROTEIN
3swm_A3e-521216618169NAC domain-containing protein 19
3swm_B3e-521216618169NAC domain-containing protein 19
3swm_C3e-521216618169NAC domain-containing protein 19
3swm_D3e-521216618169NAC domain-containing protein 19
3swp_A3e-521216618169NAC domain-containing protein 19
3swp_B3e-521216618169NAC domain-containing protein 19
3swp_C3e-521216618169NAC domain-containing protein 19
3swp_D3e-521216618169NAC domain-containing protein 19
4dul_A3e-521216615166NAC domain-containing protein 19
4dul_B3e-521216615166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436915.11e-164PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY937e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1S3XAF51e-163A0A1S3XAF5_TOBAC; NAC domain-containing protein 83-like
STRINGXP_009590289.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]