PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04953g06005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 773aa MW: 88690.2 Da PI: 8.1699

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04953g06005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	56	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eH Niben101Scf04953g06005.1 56 EFYNLYATKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEH 126 6*************************************976..............589********************* PP FAR1 86 nHela 90 nHel Niben101Scf04953g06005.1 127 NHELE 131 *96 PP
2	FAR1	66.5	6.8e-21	209	283	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn+YA++ GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++ H Niben101Scf04953g06005.1 209 EFYNAYASNSGFKVRIGQLFRSKNDGSITSRRFVCSKEGHHHP--------------SRVGCGAFMRIQRQETGRWLVDRFQNAH 279 6************************************9988..............4899******************** PP FAR1 86 nHel 89 nHel Niben101Scf04953g06005.1 280 NHEL 283 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-17	56	131	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.8E-16	209	283	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-27	381	474	IPR018289	MULE transposase domain
Pfam	PF04434	9.0E-8	647	692	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.324	647	695	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-8	670	697	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MSREEFDNAM TVRAKPASLA IVNNNNGYHR DNEEEGESKL EPNVGLEFDS AEEAQEFYNL 60 YATKLGFRIR IGQLYRSRVD GSVISRRFVC SKEGFQTTSR TGCPAFIRVQ KADSGKWVLA 120 NVKKEHNHEL ESSGEICPSR IQRKNTPNPK SSVVVVSTRS RLRSIDEDSP GPSGIIDLKR 180 FKREKIDVEL QPSEPYKGLE FTSAGEAYEF YNAYASNSGF KVRIGQLFRS KNDGSITSRR 240 FVCSKEGHHH PSRVGCGAFM RIQRQETGRW LVDRFQNAHN HELGLPADAS GRVKGFKEEA 300 SSVLENMDLV ELNGGLSLVT RGRESRIGSD WYNELFEYFQ ARQADDMGVF YSVEMHNGRA 360 MSVFWADARS RFSCTQFGDA VVFDTTYRKG GSYSVPLASF IGINHHRQPV LLGCALIAEE 420 SEESFTWVFQ AWLRAMSGRH PVSIVADQDR AIQHSIAHVF PGTHHRFSAW QIKATEQENI 480 GALLSMNPEF KYEYETCIFQ SQTANEFEAA WNVLVNKYNL RKNTWLMEMY RMRKSWVPLH 540 IRGTFFAGIP MDGSLKSYFG TILTSQTPLS EFLIRYEKAL DQRREEERKE DFNSFNLQAV 600 LHTKDPIEDQ CRRLYTVTMF QVFQKELLEC YSFVGIKINV EGAISRYLVQ KSGSRDERNR 660 VVFNASNLNV SCTCKMFEFE GVLCRHALKV FQIMNIRELP SCYILHRWTK DAKYGILRDV 720 DSGGASQDHK ALMLWSLREE AKNYIEAGTA SLERYKLAFE IMQEGRRNLC WQN

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MSREEFDNAM TVRAKPASLA IVNNNNGYHR DNEEEGESKL EPNVGLEFDS AEEAQEFYNL  60
YATKLGFRIR IGQLYRSRVD GSVISRRFVC SKEGFQTTSR TGCPAFIRVQ KADSGKWVLA  120
NVKKEHNHEL ESSGEICPSR IQRKNTPNPK SSVVVVSTRS RLRSIDEDSP GPSGIIDLKR  180
FKREKIDVEL QPSEPYKGLE FTSAGEAYEF YNAYASNSGF KVRIGQLFRS KNDGSITSRR  240
FVCSKEGHHH PSRVGCGAFM RIQRQETGRW LVDRFQNAHN HELGLPADAS GRVKGFKEEA  300
SSVLENMDLV ELNGGLSLVT RGRESRIGSD WYNELFEYFQ ARQADDMGVF YSVEMHNGRA  360
MSVFWADARS RFSCTQFGDA VVFDTTYRKG GSYSVPLASF IGINHHRQPV LLGCALIAEE  420
SEESFTWVFQ AWLRAMSGRH PVSIVADQDR AIQHSIAHVF PGTHHRFSAW QIKATEQENI  480
GALLSMNPEF KYEYETCIFQ SQTANEFEAA WNVLVNKYNL RKNTWLMEMY RMRKSWVPLH  540
IRGTFFAGIP MDGSLKSYFG TILTSQTPLS EFLIRYEKAL DQRREEERKE DFNSFNLQAV  600
LHTKDPIEDQ CRRLYTVTMF QVFQKELLEC YSFVGIKINV EGAISRYLVQ KSGSRDERNR  660
VVFNASNLNV SCTCKMFEFE GVLCRHALKV FQIMNIRELP SCYILHRWTK DAKYGILRDV  720
DSGGASQDHK ALMLWSLREE AKNYIEAGTA SLERYKLAFE IMQEGRRNLC WQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264527.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A1S4BE80	0.0	A0A1S4BE80_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A1U7XGN8	0.0	A0A1U7XGN8_NICSY; protein FAR1-RELATED SEQUENCE 7-like
STRING	XP_009791235.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]