PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04514g01005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 26811.2 Da PI: 7.5419 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Niben101Scf04514g01005.1 103 FSCNYCQRKFYSSQALGGHQNAH 125 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 28 | No hit | No description |
SuperFamily | SSF57667 | 1.52E-6 | 100 | 130 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVTLKRYVHL HPIGGQDALS SSSSSSSCQD ERKYHKQEED HQNATEDIRL REKGNGDGDG 60 HGDESDHRKN NQELNLLERL NTNNSPICDE NDPTSDGAEP RVFSCNYCQR KFYSSQALGG 120 HQNAHKRERT LAKRAGQRPI GHHHLFNFPP TPAAAAAAFG HHPYLQHQNN YNYVSSMSTL 180 PLNGANYHNN SLGIQAHSMI HKATNSSGNW SNRQFIKHQP GGEEEKNSEL QKIDLSLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262888.1 | 1e-136 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | A0A314L7G5 | 1e-134 | A0A314L7G5_NICAT; Zinc finger protein 1 | ||||
STRING | XP_009593661.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15739 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 2e-29 | zinc-finger protein 1 |