PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04267g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 390aa    MW: 45396.4 Da    PI: 8.4959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04267g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.8e-067393323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ Cg sF  + +Lk+H+++H
  Niben101Scf04267g00014.1 73 CEECGVSFQKPAHLKQHMQSH 93
                              *******************99 PP
2zf-C2H216.22.9e-0599123123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC   ++rk++L+rH+  H
  Niben101Scf04267g00014.1  99 FVCHidDCQSNYRRKDHLMRHLLQH 123
                               89*******************9887 PP
3zf-C2H217.98.4e-06167191123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+C+   Cgk+F+  s Lk+H  +H
  Niben101Scf04267g00014.1 167 YVCSepRCGKVFKFASKLKKHEDSH 191
                               89*99****************9888 PP
4zf-C2H218.46e-06268292223
                               EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                               kC+  dC  +Fs+ksnL +H +  H
  Niben101Scf04267g00014.1 268 KCEfqDCQHTFSTKSNLIQHVKAvH 292
                               79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355392447IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.62E-1069123No hitNo description
SMARTSM003550.00957193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.4227198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-87398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-999125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.09999128IPR007087Zinc finger, C2H2
SMARTSM003550.2299123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101123IPR007087Zinc finger, C2H2
SuperFamilySSF576673.29E-5110153No hitNo description
PROSITE profilePS501579.016128153IPR007087Zinc finger, C2H2
SMARTSM003550.14128153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130153IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-7163191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.87E-5165191No hitNo description
SMARTSM003550.18167191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032167196IPR007087Zinc finger, C2H2
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
SMARTSM003558.8209234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211234IPR007087Zinc finger, C2H2
SMARTSM0035513237258IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.24E-10249305No hitNo description
PROSITE profilePS5015713.547267297IPR007087Zinc finger, C2H2
SMARTSM003550.0011267292IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6268294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280269292IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-5295320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035514298324IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAVKVLGEMG EEKKEVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEVNE  60
DVKKKKGPKM NICEECGVSF QKPAHLKQHM QSHSLERPFV CHIDDCQSNY RRKDHLMRHL  120
LQHQGKLFEC PVDSCKCAFS IQGNMTRHVK EMHDQCASPE ANLPKHYVCS EPRCGKVFKF  180
ASKLKKHEDS HGKSNFKILI IFKLETMEAL CLEPGCMKHF TNEKCLKEHI ESCHQHIVCE  240
ICGTKQLKKN IKRHLRTHEE ESTSERIKCE FQDCQHTFST KSNLIQHVKA VHLGDKPFSC  300
GVAGCGMKFA FKHVRDRHEK SGCHVYTPGD FVEADEQFRS RPRGGRKRKL PVFEAVMRKR  360
IKPPCDTDPM FYQGSEYLSW LLSAESDEEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-137522919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-137522919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340348RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804392.10.0PREDICTED: Krueppel-related zinc finger protein 1-like isoform X2
RefseqXP_016477869.10.0PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-106TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S4AMJ80.0A0A1S4AMJ8_TOBAC; transcription factor IIIA-like isoform X2
TrEMBLA0A1U7YJY40.0A0A1U7YJY4_NICSY; Krueppel-related zinc finger protein 1-like isoform X2
STRINGXP_009804391.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.26e-98transcription factor IIIA