PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04130g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 306aa    MW: 33715.6 Da    PI: 9.5597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04130g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.5e-20203236134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +
  Niben101Scf04130g00007.1 203 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 236
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.517197233IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-15197247IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15202260No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14202234IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.37E-16202249No hitNo description
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
PfamPF003201.1E-17203236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKMTMIGHCG YLDGIPTGPV VDEDFDDILN FLDFPLESLE ENGQGVEWDA SESKFLGPIP  60
TDALMAFPPV PQGNIGNGRV KAEPNSNRPI KVTEGQGSGI FQTQSPVSVL ESSNSCSGGK  120
SISIKHDIAI PVRPRSKRPQ SSALNPWILM HPISSTRFVS KKTCDARKGK EKKRKMSLLS  180
VPQIADVTKK KTTSAQQFSL KKCTHCQVTK TPQWREGPLG PKTLCNACGV RYRSGRLFPE  240
YRPAASPTFV PTLHSNSHRK VVEMRKKAMY GETSALEEPH NVIVEGTPMS PAPEFVPRSS  300
YLFDVY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240881.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLA0A1J6JQ450.0A0A1J6JQ45_NICAT; Gata transcription factor 11
STRINGXP_009795845.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-48GATA transcription factor 11