PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03971g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 75aa MW: 8489.58 Da PI: 8.2446 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 9 | 31 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H Niben101Scf03971g00013.1 9 HECPFCNRMFKSGQALGGHKRSH 31 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.07E-6 | 7 | 33 | No hit | No description |
PROSITE profile | PS50157 | 9.452 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-10 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MKAKKFKGHE CPFCNRMFKS GQALGGHKRS HFLTGTQENQ YQTSAFKREV VDLLDLNLPA 60 PVDDVNDESA FVSSW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791314.1 | 3e-39 | PREDICTED: uncharacterized protein LOC104238609 | ||||
Refseq | XP_016485576.1 | 3e-39 | PREDICTED: uncharacterized protein LOC107805973 | ||||
TrEMBL | A0A1S4B9K2 | 7e-38 | A0A1S4B9K2_TOBAC; uncharacterized protein LOC107805973 | ||||
TrEMBL | A0A1U7XWK2 | 7e-38 | A0A1U7XWK2_NICSY; uncharacterized protein LOC104238609 | ||||
STRING | XP_009791314.1 | 1e-38 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1343 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 5e-20 | C2H2-like zinc finger protein |