PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03737g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 166aa MW: 18787.5 Da PI: 8.7745

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03737g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	90.4	4.6e-28	8	121	5	124
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 ++seq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt++ +vn+a a q +++s l+++ + +++++ e + + +++ Niben101Scf03737g01002.1 8 TNSEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNMWTVNMAAAFQS-SSSSWLSHTHHLHQVANYTPEYKI-D-FGSSS 89 579**************************************999877665.555667887776666666554332.2.22222 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqr 124 +++s+ ++ + + + + p+ v+rPPekrqr Niben101Scf03737g01002.1 90 KCNSK---MQAIRPSITSNPPEERIVNRPPEKRQR 121 22222...222344555556666669******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-31	9	121	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MATCIDSTNS EQLCYIPCNF CNIVLAVSVP CSNLFDIVTV RCGHCTNMWT VNMAAAFQSS 60 SSSWLSHTHH LHQVANYTPE YKIDFGSSSK CNSKMQAIRP SITSNPPEER IVNRPPEKRQ 120 RWAHFPHIHF GLTLETKNQA KLGVSENAEK HIMHRAALPK IKKFTF

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762052.1	1e-97	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016452662.1	1e-97	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	4e-45	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3YL24	3e-96	A0A1S3YL24_TOBAC; axial regulator YABBY 5-like
TrEMBL	A0A1U7V1C3	3e-96	A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1
STRING	XP_009762052.1	4e-97	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-46	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]