PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02853g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 558aa    MW: 63369.1 Da    PI: 8.3145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02853g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-13791461283
                               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               +++  ++p  fa+++++   ++++  led+sgr+W+v++  +++ g+  +++GW +F +++gL+ gDf+v +
  Niben101Scf02853g00011.1  79 ANSFQYFPPMFARSISHL--TDRETYLEDSSGRRWRVTV--CNHEGSLAIRQGWPKFSSEHGLNLGDFLVQY 146
                               4556689999**999755..5668***************..****************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.09768166IPR003340B3 DNA binding domain
SMARTSM010190.002272155IPR003340B3 DNA binding domain
CDDcd100171.57E-973153No hitNo description
SuperFamilySSF1019366.67E-1377157IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-1178144IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1281156IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.869463558IPR003340B3 DNA binding domain
SMARTSM010190.062468555IPR003340B3 DNA binding domain
CDDcd100178.82E-11472547No hitNo description
Gene3DG3DSA:2.40.330.101.7E-10476549IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-13476551IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MITCIERDIV VLVQSLRYIA KSARKVPYNK RDKSNKRLFF GQCEKEALQL EQKRETVANR  60
FSLLSPCCFT LFSDVLTFAN SFQYFPPMFA RSISHLTDRE TYLEDSSGRR WRVTVCNHEG  120
SLAIRQGWPK FSSEHGLNLG DFLVQYFIVQ IYDKSGCQKI KFYSDTSKGK RKTRTYPEAT  180
SQVKLLQTTD INPVNKRSKI SAVSESEKIT CKTHITKFAT NIDADTGKGQ LVYPAVYVDE  240
SFCMIDRDAQ YHQGDDRLCL HLSSFEMPAS KPLAEGTSSL LKADGGKSNH VKTNLKSQTE  300
PNLVVVADYL NSEELLPKFE AEITGMDMVP AEDIPLLSKK DQNDCPSGII SSSFLKPAAN  360
VKKNDGVSNV TKYQNHWMIT DTKSMMLQSD NKDGRCTGTN QITREKSNEA SRFTRETVKR  420
EYEETAAEAY YPARAISGKE PANGEKVIKS EPADSGDMPS LKAVSYSCLL EVDGRDFLEL  480
PESWRKYLMK KAKLERWIIF LRGPDRKIWP ILYHRRSGVD VLTNGWKNFA AAYALNCGDD  540
CLFELENQWE CIFAVCKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12337RKVPYNKRDKSNKRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775871.10.0PREDICTED: uncharacterized protein LOC104225716 isoform X1
RefseqXP_016504690.10.0PREDICTED: uncharacterized protein LOC107822650 isoform X1
TrEMBLA0A1S4CU910.0A0A1S4CU91_TOBAC; uncharacterized protein LOC107822650 isoform X1
TrEMBLA0A1U7WF460.0A0A1U7WF46_NICSY; uncharacterized protein LOC104225716 isoform X1
STRINGXP_009775871.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-07B3 family protein