PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02840g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 28597 Da PI: 5.1429 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.8 | 1.3e-37 | 9 | 127 | 1 | 109 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL+ ++++k++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWka Niben101Scf02840g00004.1 9 LPPGFRFHPTDEELIMYYLRYQATSKPCPV-SIIPEVDLYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKA 92 79****************************.89***************99999******************************** PP NAM 86 tgkdkevlskkgel...........vglkktLvfy 109 tg+dk+++s+++ l + + kt+ Niben101Scf02840g00004.1 93 TGTDKAIYSASKYLddwvlcriykkKNMGKTMEMM 127 ********963332444444433334555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-44 | 5 | 117 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.575 | 9 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-16 | 10 | 101 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVGKITSDLP PGFRFHPTDE ELIMYYLRYQ ATSKPCPVSI IPEVDLYKFD PWELPEKAEF 60 GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SASKYLDDWV LCRIYKKKNM 120 GKTMEMMKAE EEESEAQIEI TNNDIEVVGA TTSGPQTNKL PRNCSLSHLL ELNYFGSIPQ 180 LLGDNSYHTS FDNDQSYIMN NVNTNVVHQM EKSQLGEVSH QHNSQNNNYN IFFNQQPLFV 240 NPAFQFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-46 | 8 | 119 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773865.1 | 1e-163 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_016457734.1 | 1e-163 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | K4BWV2 | 1e-126 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A1S3YZW3 | 1e-161 | A0A1S3YZW3_TOBAC; NAC transcription factor 29-like | ||||
TrEMBL | A0A1U7WI01 | 1e-161 | A0A1U7WI01_NICSY; NAC transcription factor 29-like | ||||
STRING | XP_009773865.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-70 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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