PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02537g10009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 270aa MW: 30808.8 Da PI: 8.753

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02537g10009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	113	129	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C++C+k+F+r nL+ Niben101Scf02537g10009.1 113 FSCHICHKTFNRYNNLQ 129 89************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MERLYLASSS SVENQIEPFD FFAEKTQNAF EFLSLSQSSE KEITLSNNQD NPNSCNWLDK 60 EDDVTVALHI GLPNFNNTST NISTHHNKGD ANIAATNYWI PTPSQILVGF TQFSCHICHK 120 TFNRYNNLQQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCEEGCKNN INHPRAKPLK 180 DFRTLQTHYK RKHGTKRFAC RKCGKCLAVK GDWRTHEKNC GKRWLCICGS DFKHKRSLKD 240 HIASFGESHG PCPPNSFEGV EAQKKYSVFV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019245243.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-104	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1J6IGH3	0.0	A0A1J6IGH3_NICAT; Protein transparent testa 1
STRING	XP_009761488.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-104	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]