PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02509g07006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 52044.1 Da PI: 9.2028 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 7e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ f+ G C G+ C F+H+ Niben101Scf02509g07006.1 3 KRVLCK-FFVHGACLKGEYCEFSHD 26 99****.7777*************5 PP | |||||||
2 | zf-CCCH | 22.1 | 2.7e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ Niben101Scf02509g07006.1 34 VCTYYQK-GLCAYGSRCRYEHV 54 5******.***********997 PP | |||||||
3 | zf-CCCH | 21.5 | 4.2e-07 | 139 | 159 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ a+ G C++G++C+++Hg Niben101Scf02509g07006.1 139 ICS-LAAAGNCPRGEKCPYIHG 159 677.8999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.544 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.183 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.084 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.08 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 140 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 5.05E-12 | 195 | 267 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 3.0E-9 | 196 | 262 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 6.45E-5 | 202 | 262 | No hit | No description |
PROSITE profile | PS50089 | 12.268 | 203 | 261 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.3E-6 | 203 | 260 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 1.3E-6 | 203 | 260 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 227 | 236 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKASQQH 60 SPPSSSASAQ HLHSDSSPTT LSPGMLADGV GLSAEYLNSG RPFYPPNQAA WSENSEHHHV 120 EDIENFVELK RINRANQSIC SLAAAGNCPR GEKCPYIHGD LCPICAKHCL HPFRPQEIEE 180 HMKTCEKRQK HLDLLKHSQE IECCVCLERV LSKTTAAERK FGILSECDHP FCISCIRNWR 240 SGSPSSGIDI NSTFRTCPLC RKLSYFVIPS VIWYSTKEEK QDILDSYKAK LSINTVMAVW 300 RKWYCVILVL KMEAHANSPG DMRWSSRCRH SVPGRGHGYI YIYTQIDYQV FYARQTRKKK 360 MHSVKEKVSN AAAAGKEHVL KAKAKEKFFI SILEPSRAVI DMILLNSIPK LPYKVPVFTP 420 IIQDLSQMPD TLRPKLNGPS IVKPSKPQSP KIKAAQKVK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779788.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X4 | ||||
Swissprot | E0X9N4 | 1e-119 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1U7WMH2 | 0.0 | A0A1U7WMH2_NICSY; zinc finger CCCH domain-containing protein 69-like isoform X4 | ||||
STRING | XP_009779785.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3386 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-111 | C3H family protein |
Publications ? help Back to Top | |||
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