PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02360g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 361aa    MW: 41286.9 Da    PI: 6.8235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02360g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005179101323
                               ET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                               C+   Cgk+F +   L++H   H
  Niben101Scf02360g01009.1  79 CSydGCGKTFIDAGALRKHSHIH 101
                               78889**************7766 PP
2zf-C2H222.43.1e-07127151123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+Cp   Cgk Fs   nL++H++tH
  Niben101Scf02360g01009.1 127 YVCPheGCGKAFSLDFNLRSHMKTH 151
                               99**********************9 PP
3zf-C2H216.42.7e-05157182123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               + Cp   Cgk++ + + Lk+Hi + H
  Niben101Scf02360g01009.1 157 HICPypECGKRYAHEYKLKNHIASsH 182
                               679999****************9988 PP
4zf-C2H216.23e-05220245123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               y+Cp   C+ks+ + + L+ H+r+ H
  Niben101Scf02360g01009.1 220 YSCPyeGCDKSYIHEYKLNLHLRNmH 245
                               99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-678102No hitNo description
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576676.38E-15108161No hitNo description
Gene3DG3DSA:3.30.160.603.2E-20111152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.7E-4127151IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.882127156IPR007087Zinc finger, C2H2
PROSITE patternPS000280129151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-7153180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.024157182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349157187IPR007087Zinc finger, C2H2
PROSITE patternPS000280159182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-9214242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.49E-5214242No hitNo description
SMARTSM003558.2E-4220245IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.344220250IPR007087Zinc finger, C2H2
PROSITE patternPS000280222245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MENHMAHHLF ERRPIYKSKA PAAKWFKEWV PQDVVATGGK CYLLKWVNEA TLKALKEKPK  60
EPEVPVPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYKFLD SSKLKRHFLI  120
HTGERDYVCP HEGCGKAFSL DFNLRSHMKT HSQENYHICP YPECGKRYAH EYKLKNHIAS  180
SHQKNSTPDA PKYTPPVEKP MKTPKSSSAA YASSSSDRPY SCPYEGCDKS YIHEYKLNLH  240
LRNMHPGHFP EDNAKNAQST ADNEMDEGSD QDAFPGKRGN GKIQKQSRPK PSLKQPPLKV  300
ARKSSRSPAN ISIAAKKPWP VKEENFNEED SEETEEERDD VGDGWRYGEN DDDDEETEED  360
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C7e-29791808116PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350548.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_019229384.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-146YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A314KMZ60.0A0A314KMZ6_NICAT; Putative zinc finger protein
TrEMBLM1AIE20.0M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]