PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02268g06007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CAMTA | ||||||||
Protein Properties | Length: 1166aa MW: 131268 Da PI: 6.387 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 161.7 | 1.3e-50 | 20 | 122 | 2 | 104 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 l+ ++rwl++ ei++iL+n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+sw+kkkdgktv+E+he+LK g+++vl+cyYa Niben101Scf02268g06007.1 20 LEAQHRWLRPAEICEILKNYQKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHERLKAGSIDVLHCYYA 104 5679********************************************************************************* PP CG-1 87 hseenptfqrrcywlLee 104 h+een++fqrr+yw+Lee Niben101Scf02268g06007.1 105 HGEENEHFQRRSYWMLEE 122 ****************97 PP | |||||||
2 | CG-1 | 118.2 | 4.1e-37 | 126 | 198 | 46 | 118 |
CG-1 46 kvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 ++ryfrkDG+sw+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw+Leee+++ivlvhy+evk Niben101Scf02268g06007.1 126 VLRYFRKDGHSWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENEHFQRRSYWMLEEEMSHIVLVHYREVK 198 78********************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 73.214 | 15 | 203 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-58 | 18 | 119 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-43 | 21 | 122 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.6E-31 | 120 | 198 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.1E-30 | 126 | 196 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.5E-4 | 578 | 661 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 2.2E-4 | 579 | 655 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 6.65E-16 | 579 | 663 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 19.147 | 761 | 882 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.20E-13 | 761 | 869 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.1E-18 | 762 | 874 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.33E-18 | 766 | 872 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.1E-8 | 783 | 873 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.152 | 811 | 843 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0016 | 811 | 840 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 120 | 850 | 879 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.72E-7 | 979 | 1036 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 50 | 985 | 1007 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.346 | 987 | 1015 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.19 | 988 | 1006 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0042 | 1008 | 1030 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.285 | 1009 | 1033 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.3E-4 | 1011 | 1030 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1166 aa Download sequence Send to blast |
MADSRRYGLN AQLDIDQILL EAQHRWLRPA EICEILKNYQ KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHSWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE HFQRRSYWML 120 EEWFTVLRYF RKDGHSWRKK KDGKTVKEAH ERLKAGSIDV LHCYYAHGEE NEHFQRRSYW 180 MLEEEMSHIV LVHYREVKGT RTNFSRTREP QEATPRSQET DEDVHSSEVD SSASTKFYPN 240 DYQVSSQVTD ATSLSSAQAS GYEDAESAYN QHPTSGFHSF LDAQPSMMQK AGESLPVPYH 300 PIPFSNDHQV QFAGSSDMDF FSSAPGNKSG NTANMYIPSR NLDFPSWETI SVNNPAAYQS 360 YHFQPSSQSG ANNMTHEQGS TTTGQVFLND FKKQGQNRID GLGDWQTSEG DAAFISKWSM 420 DQKLNLNLAS DHTIRSSAAY NVELHNSLEA SHILPSHQEK HPMQNELPSQ HSDANVGGSL 480 NAELDHNLSI GVRTDHSSLK QPLLDGVLRE GLKKLDSFDR WMSKELEDVS EPHMQSNSSS 540 YWDNVGDDEG VDNSTIASQV QLDTYMLSPS LSQDQFFSII DFSPSWAFAG SEIKVLITGK 600 FLKSQPEVEK WACMFGELEV PAEVIADGVL RCHTPNQKAG RVPFYITCSN RLACSEVREF 660 EFRVSESQDV DVANSCSSSE SLLHMRFGKL LSLESTVSPS SPPRSEDDVS HVCSKINSLL 720 KEDDNEWEEM LNLTYENNFM AEKVKDQLLQ KLLKEKLRVW LLQKVAEGGK GPNVLDEGGQ 780 GVLHFAAALG YDWAIPPTIA TGVSVNFRDV NGWTALHWAA SYGRERTVGF LISLGAAPGA 840 LTDPTPKHPS GRTPADLASS NGHKGIAGYL AESSLSSHLS SLELKEMKQG ENVQPFGEAV 900 QTVSERSATP AWDGDWPHGV SLKDSLAAVR NATQAAARIH QVFRVQSFQR KQLKEHGGSE 960 FGLSDEHALS LLALKTNKAG QHDEPVHTAA VRIQNKFRSW KGRRDYLLIR QRIIKIQAHV 1020 RGHQVRNKYK NIIWSVGILE KVILRWRRKG SGLRGFKPEA TLTEGSNTQD RPVQEDDYDF 1080 LKEGRKQTEQ RLQKALARVK SMVQYPEARD QYRRLLNVVS DMKDTTTSSD GAPSNSGEAA 1140 DFGDDLIDLD DLLDDDTFIL SSSLST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4hb5_A | 5e-12 | 762 | 870 | 20 | 122 | Engineered Protein |
4hb5_B | 5e-12 | 762 | 870 | 20 | 122 | Engineered Protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00042 | PBM | Transfer from AT2G22300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019223673.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3-like isoform X2 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A314KWY2 | 0.0 | A0A314KWY2_NICAT; Calmodulin-binding transcription activator 3 | ||||
STRING | XP_009763882.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2230 | 21 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |