PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02112g02009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20549.4 Da PI: 9.3801 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 91 | 2.9e-28 | 8 | 122 | 5 | 124 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 ++seq+Cy+ Cn+Cn +lavsvP + lf +vtvrCGhCt++ +vn+a a q +++ + +++ + +++++ e +++ +++ Niben101Scf02112g02009.1 8 TNSEQLCYIPCNYCNIVLAVSVPCSNLFDIVTVRCGHCTNMWTVNMAAAFQSSSSSWQ-SHTHHLHQVANYTPPEYKIDFGSSSK 91 579******************************************9998887777766.66777777777777777777776666 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqr 124 ++++ +l++n +ee v+rPPekrqr Niben101Scf02112g02009.1 92 CNSRNMAVRPSLTKNPREERI----VNRPPEKRQR 122 666666666666666666554....8********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.2E-32 | 9 | 122 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MTTCIDSTNS EQLCYIPCNY CNIVLAVSVP CSNLFDIVTV RCGHCTNMWT VNMAAAFQSS 60 SSSWQSHTHH LHQVANYTPP EYKIDFGSSS KCNSRNMAVR PSLTKNPREE RIVNRPPEKR 120 QRWAHFPHIH FGLTLETKNQ AKLGVSENAE KHIMNRAAIP KIKNFTLGAD PGNKKGIHKN 180 LGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762052.1 | 1e-102 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_016452662.1 | 1e-102 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 2e-45 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3YL24 | 1e-101 | A0A1S3YL24_TOBAC; axial regulator YABBY 5-like | ||||
TrEMBL | A0A1U7V1C3 | 1e-101 | A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1 | ||||
STRING | XP_009762052.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-45 | YABBY family protein |
Publications ? help Back to Top | |||
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