PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02066g04005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 679aa MW: 74692.8 Da PI: 6.1019 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.6 | 3.2e-29 | 216 | 269 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Niben101Scf02066g04005.1 216 KPRVVWSVELHQQFVQAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 269 79*******************.********************************8 PP | |||||||
2 | Response_reg | 73.2 | 1e-24 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl+vdD+p+ +++l+++l++ +y ev+ +e al ll+e++ +D+++ D+ mp+mdG++ll + e +lp+i+++a +++ Niben101Scf02066g04005.1 35 VLVVDDDPTCLRILEKMLRNCHY-EVTKSNRAEIALSLLRENRngFDIVISDVHMPDMDGFKLLVHVGLEM-DLPVIMMSADDSK 117 89*********************.***************99999**********************96644.8************ PP HHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelvk 109 + + + + Ga d+l Kp+ +e+l + Niben101Scf02066g04005.1 118 DVVMKGVTHGACDYLIKPVRIEALKN 143 **********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-180 | 14 | 670 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.02E-34 | 32 | 156 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.1E-41 | 32 | 156 | No hit | No description |
SMART | SM00448 | 2.1E-28 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.096 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.5E-22 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.56E-26 | 36 | 149 | No hit | No description |
PROSITE profile | PS51294 | 11.2 | 213 | 272 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.51E-21 | 214 | 273 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 215 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-25 | 216 | 269 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-8 | 218 | 268 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MNLGVGSVGK IMSGASCSVS WKSNDNNQFP AGLRVLVVDD DPTCLRILEK MLRNCHYEVT 60 KSNRAEIALS LLRENRNGFD IVISDVHMPD MDGFKLLVHV GLEMDLPVIM MSADDSKDVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVIR KKKHEWKDKD FDQSATAEEG DRQQKPPEDV 180 DYSSSANEGG NWKSSKRRKE EEDETEERDD SSSLKKPRVV WSVELHQQFV QAVNQLGIDK 240 AVPKKILELM NVPGLTRENV ASHLQKYRLY LRRLSGVSQH PSGLNNSFMG NPEATYGMSS 300 FNGLELQALA ATGQLPAQSL ATLQAAALGR SATKGATISM PLVDQRNLFS FENPKLRFPE 360 GQQQLNNSNK QINLLHGIPT TMEPKQLADL HQSSHSPSFV AVNMQGNSRM QQNSALLMHM 420 SQQQQQPSRA QMLNETNNGS QVSRPPLSMS QQPLSSNGMP GAVLSWSGGG VAYVRGPVYS 480 PVSQASPMVD FSLNQNTELQ NNSFPLVSSN SGMSTITSKR MLQEDVNSDI KQPRGFPSGY 540 NMFDELHQQK SQDWGLSSVG STFDSSHHST IPGTLDISPS MLVQQGISSM KRNGQNGISP 600 VSDAFSSSRE ESGNANPMGG NLLTVKAEQL PDASYQSSFF PDQFGQDDLM SALLKQQESV 660 GPVETEFGFD GYALDNLPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-21 | 212 | 275 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245479.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | A0A0A1WC27 | 0.0 | A0A0A1WC27_NICAT; Two-component response regulator | ||||
STRING | XP_009615647.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-161 | response regulator 1 |