PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01750g08006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 633aa MW: 70396.5 Da PI: 7.662

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01750g08006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.8	4.4e-09	379	416	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ L+k++gLt +qV++WF N R + Niben101Scf01750g08006.1 379 FEHflHPYPKDSDKIMLSKQTGLTRSQVSNWFINARVR 416 554459******************************88 PP
2	BELL	114.3	6.5e-37	245	316	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe q+kkakL+++leeV++rY+qy++q+q+++s Fe+vag+gsak+Yt+lAl+aiS++FrcLkd i++qi Niben101Scf01750g08006.1 245 QRQEFQMKKAKLVTMLEEVEQRYRQYHQQMQIIVSTFEQVAGIGSAKSYTQLALHAISKQFRCLKDTIVGQI 316 699*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.9E-56	168	314	IPR006563	POX domain
Pfam	PF07526	4.6E-47	173	312	IPR006563	POX domain
PROSITE profile	PS50071	11.693	357	420	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	360	424	IPR001356	Homeobox domain
CDD	cd00086	1.55E-11	360	421	No hit	No description
SuperFamily	SSF46689	1.45E-16	361	426	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	363	426	IPR009057	Homeodomain-like
Pfam	PF05920	6.7E-18	377	416	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MYYQGTSDNI HQAADGNIQT LYLMNPSYIH QGYTDTQHHH HQQQIIPHAL MQHFVGVPLP 60 AVSLHDQNHA QLIHRLWNQS GSGGGNGIHH QSQIIPSSTV VSATSCGGTT TDLASQLGFQ 120 RPITMSPTQQ QQRQSGLSLS LSPQQQQLSF NNISGQNQVG SNINRGLDGI SSMVLGSKYL 180 KAAQELLDEV VSVGKCTKGG EVEKEELINN ESILPWASHD VNTNNGGSES SSKQKYGVAE 240 LTTSQRQEFQ MKKAKLVTML EEVEQRYRQY HQQMQIIVST FEQVAGIGSA KSYTQLALHA 300 ISKQFRCLKD TIVGQIKATS KSLGEEDEGV GGKTRLKFVD HHLRQQRALQ QLGMMQPNAW 360 RPQRGLPERA VSVLRAWLFE HFLHPYPKDS DKIMLSKQTG LTRSQVSNWF INARVRLWKP 420 MVEEMYLEEV KNNQEQNSSS EGNKNKNESN KEKMVSKSSG PQENGTPAEI ATSTSSTSPP 480 ACGSFQAVQA HNFSFLGSLN MENNTTAKKP RNHDMHNNSP SSILSSVEMM AETKARDHQS 540 NKGFNPLMDA AAVYTMGEFG RFNPHEQMAA TNFHGNNGVS LTLGLPPNSE NQSQQSYQNT 600 IEFNRMSYED IDFQNKRFPS QLLPDFVAGN LGT

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MYYQGTSDNI HQAADGNIQT LYLMNPSYIH QGYTDTQHHH HQQQIIPHAL MQHFVGVPLP  60
AVSLHDQNHA QLIHRLWNQS GSGGGNGIHH QSQIIPSSTV VSATSCGGTT TDLASQLGFQ  120
RPITMSPTQQ QQRQSGLSLS LSPQQQQLSF NNISGQNQVG SNINRGLDGI SSMVLGSKYL  180
KAAQELLDEV VSVGKCTKGG EVEKEELINN ESILPWASHD VNTNNGGSES SSKQKYGVAE  240
LTTSQRQEFQ MKKAKLVTML EEVEQRYRQY HQQMQIIVST FEQVAGIGSA KSYTQLALHA  300
ISKQFRCLKD TIVGQIKATS KSLGEEDEGV GGKTRLKFVD HHLRQQRALQ QLGMMQPNAW  360
RPQRGLPERA VSVLRAWLFE HFLHPYPKDS DKIMLSKQTG LTRSQVSNWF INARVRLWKP  420
MVEEMYLEEV KNNQEQNSSS EGNKNKNESN KEKMVSKSSG PQENGTPAEI ATSTSSTSPP  480
ACGSFQAVQA HNFSFLGSLN MENNTTAKKP RNHDMHNNSP SSILSSVEMM AETKARDHQS  540
NKGFNPLMDA AAVYTMGEFG RFNPHEQMAA TNFHGNNGVS LTLGLPPNSE NQSQQSYQNT  600
IEFNRMSYED IDFQNKRFPS QLLPDFVAGN LGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	366	424	5	63	Homeobox protein Meis2
3k2a_B	1e-15	366	424	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019264721.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	O65685	1e-95	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A314L3F3	0.0	A0A314L3F3_NICAT; Bel1-like homeodomain protein 1
STRING	XP_009773899.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	8e-93	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]