PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01521g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 529aa    MW: 60382.3 Da    PI: 8.4681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01521g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016461483123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kCp C++ F++   L  H r+H
  Niben101Scf01521g05003.1 461 HKCPFCPRIFKSGQALGGHKRSH 483
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-5737No hitNo description
PROSITE profilePS5015710.242936IPR007087Zinc finger, C2H2
SMARTSM003550.026931IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.84794121IPR007087Zinc finger, C2H2
SMARTSM003550.2394116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139129.2E-796118IPR007087Zinc finger, C2H2
PROSITE profilePS501579.265375402IPR007087Zinc finger, C2H2
SMARTSM003555.4375397IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-7375399IPR007087Zinc finger, C2H2
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974461483IPR007087Zinc finger, C2H2
SMARTSM003550.031461483IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-7461483IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEEDQDMKFV CKLCNKRYPC GKSLEGHMRS HEFEENFEAK LKKVQSWSTI NGKNFKRENQ  60
SKLELGGVSS YGLRENPKKT WRAEDSIPPL PQEKVCQQCG KVFQSMKALC GHMACHSEKD  120
KGGLNLKDDN SWSSESNSDT EAEELLSPKC RSKAKRYKTI IVKSSICKVN NNYNCSSSVS  180
EIDHEKEQEE VAKCLMMLSR DSGIWNGVNS VVESSDNNSI VLETKSSSND MRNARNNSLK  240
RVYNQDEETR TKKKEDRNLK RDMLDAETQS ENSDSDYFLC ENGKVDSDGS VERFRGNGTC  300
KWSTSKVSLG AWLDEGRNDE KKSINRIKRY RTESRKDLST KYENGGYELA SNFDKCESRK  360
GTTDRHKNIH KKRKYECLNC QKTFSSYQAL GGHRPCHKKI NDYSESTYET GENSLGADND  420
TKCINISKHK ETYNNKKPTV STQDVPCEPE KKVKPKKSKG HKCPFCPRIF KSGQALGGHK  480
RSHFIHASVS EENFNKSSAI KREVADLLDL NLPAPVDDED DEHARFMSW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245577.10.0PREDICTED: uncharacterized protein LOC109225388
TrEMBLA0A1J6IT720.0A0A1J6IT72_NICAT; Zinc finger protein zat1
STRINGXP_009761680.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-52C2H2-like zinc finger protein