PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01481g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 542aa    MW: 60414.5 Da    PI: 4.5362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01481g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52101371128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               l+pGfrFhPtdeelv +yL++k+ gk+l++ ++i+e+diykvePwdLp  +++k+++ ewyfFs  dkk+ +g ++nrat++gyW
  Niben101Scf01481g02006.1  10 LAPGFRFHPTDEELVRYYLRRKIIGKPLRF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSMLDKKHGNGAKTNRATERGYW 93 
                               579*************************99.99***************6347788888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd++v++ k+++vg+kktLv+++grapkg++t+Wvmhey+l
  Niben101Scf01481g02006.1  94 KTTGKDRAVHH-KSKVVGMKKTLVYHSGRAPKGQRTNWVMHEYKL 137
                               ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-619160IPR003441NAC domain
PROSITE profilePS5100558.1810160IPR003441NAC domain
PfamPF023657.5E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MESKGSKNLL APGFRFHPTD EELVRYYLRR KIIGKPLRFD AISEIDIYKV EPWDLPGMSR  60
LKTRDLEWYF FSMLDKKHGN GAKTNRATER GYWKTTGKDR AVHHKSKVVG MKKTLVYHSG  120
RAPKGQRTNW VMHEYKLIDE ELDKAGIAQD AFVLCRIFQK SGAGPKNGEK YGAPFVEEEW  180
EDDELEIVPK EEAADEVEFG DDIYLGGHDL EQILGTDTPV NGAPPPFIRY CEENASNSGE  240
TSNSLEDTKK WLQPPDDKES FDPAIEENVN ANPVKHEFMS EPSKNVNSED VDYLLNEPIE  300
TATDTLQFND GAFLEASDLS RPIDTSSFDM LEEYLSFFDA DDDFQNMGFN PPMMIGGDDH  360
VSDLASLADK NIGEVAEQPV APSEEPADQK TNVASSSKLE PSKFGSDYKY PFMKQASCML  420
GGIPAPPAFA SEFPSKDAAF RMNSSSEASS SIHVTAGYIQ IRNMTMSGNG TDGLEGKHGN  480
YNILLSLGLS QHVDSSAGLE SAVSIFPGKT ISTASWCWFY YLFSWVLILS MSFKIGTLIR  540
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-441016617171NO APICAL MERISTEM PROTEIN
1ut4_B1e-441016617171NO APICAL MERISTEM PROTEIN
1ut7_A1e-441016617171NO APICAL MERISTEM PROTEIN
1ut7_B1e-441016617171NO APICAL MERISTEM PROTEIN
3swm_A9e-451016620174NAC domain-containing protein 19
3swm_B9e-451016620174NAC domain-containing protein 19
3swm_C9e-451016620174NAC domain-containing protein 19
3swm_D9e-451016620174NAC domain-containing protein 19
3swp_A9e-451016620174NAC domain-containing protein 19
3swp_B9e-451016620174NAC domain-containing protein 19
3swp_C9e-451016620174NAC domain-containing protein 19
3swp_D9e-451016620174NAC domain-containing protein 19
4dul_A1e-441016617171NAC domain-containing protein 19
4dul_B1e-441016617171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764398.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016467787.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1S3ZTU30.0A0A1S3ZTU3_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7VDG20.0A0A1U7VDG2_NICSY; NAC domain-containing protein 78-like
STRINGXP_009764398.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-135NAC domain containing protein 2