PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01464g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 164aa    MW: 19037.1 Da    PI: 10.7869
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01464g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.41e-09711154897
                    DUF573  48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                               +++++++ eK++rLK+K++k  +      +  ++++hd+ki+e++++iWg
  Niben101Scf01464g01004.1  71 TFTEKEIAEKLKRLKEKYHKLARS-----KSLIKTPHDKKIYEIARQIWG 115
                               68899**************99988.....6789****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-1042115IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTTPSRPKRN PTSAVNHRKN SPKSPEKPIP ITKTISKTPE THRVFTENDE IQLLKTLSGS  60
PKISEFTSNG TFTEKEIAEK LKRLKEKYHK LARSKSLIKT PHDKKIYEIA RQIWGRNAAK  120
GKEEGVELRR SCEEDLKLKL KKNEYCKEGL RRLGKEKLKR MNEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232433.18e-89PREDICTED: probable transcription factor At1g11510
TrEMBLA0A1J6L2S02e-87A0A1J6L2S0_NICAT; Uncharacterized protein
STRINGXP_009592165.16e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1363478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.29e-08DNA-binding storekeeper protein-related transcriptional regulator