PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01463g08015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 304aa    MW: 35559.9 Da    PI: 6.8801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01463g08015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.81.7e-2281333128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               p +rF Ptd el+ ++Lkk  +g++l+ e  i+  +iy    Pw++  +   eek  yf s+ +k++++ kr +r+ ++g+Wka+
  Niben101Scf01463g08015.1   8 PSVRFYPTDAELI-YFLKKFFKGESLPSECPIRLGEIYGDrPPWEISDH--PEEKIGYFISPLKKRKESHKRFRRTCANGTWKAQ 89 
                               789**********.***********9996669999**986478***733..344556***************************9 PP

                       NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   +++++kg++vg +k+ v+   +g+++k  k +W+m ey++
  Niben101Scf01463g08015.1  90 TGGDPIKNSKGTVVGFRKSYVYRtrSGKESKQDKINWLMREYSV 133
                               999*******************97678999999*********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-274155IPR003441NAC domain
PROSITE profilePS5100527.4286156IPR003441NAC domain
PfamPF023652.1E-148133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSMVSRLPSV RFYPTDAELI YFLKKFFKGE SLPSECPIRL GEIYGDRPPW EISDHPEEKI  60
GYFISPLKKR KESHKRFRRT CANGTWKAQT GGDPIKNSKG TVVGFRKSYV YRTRSGKESK  120
QDKINWLMRE YSVGDDYFRK NNIPKQDIVL CRIKKNIKQR NRKNGVNMEE HEVAQVIETM  180
LREPDYNSSE SATISQRYQI MNAEYTEQHL RGLNKNSQIL TTYDRDEAIL ENHEASINRV  240
YVMTEEANTA ASEQEEAYGQ LFFPGIHEQY CAEADLNTDN SDFLEALLKG GDYIVPDDWW  300
HQFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-13115512164NO APICAL MERISTEM PROTEIN
1ut4_B1e-13115512164NO APICAL MERISTEM PROTEIN
1ut7_A1e-13115512164NO APICAL MERISTEM PROTEIN
1ut7_B1e-13115512164NO APICAL MERISTEM PROTEIN
3swm_A1e-13115515167NAC domain-containing protein 19
3swm_B1e-13115515167NAC domain-containing protein 19
3swm_C1e-13115515167NAC domain-containing protein 19
3swm_D1e-13115515167NAC domain-containing protein 19
3swp_A1e-13115515167NAC domain-containing protein 19
3swp_B1e-13115515167NAC domain-containing protein 19
3swp_C1e-13115515167NAC domain-containing protein 19
3swp_D1e-13115515167NAC domain-containing protein 19
4dul_A1e-13115512164NAC domain-containing protein 19
4dul_B1e-13115512164NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787362.10.0PREDICTED: NAC transcription factor 29-like
RefseqXP_016447919.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A1S3Y7L10.0A0A1S3Y7L1_TOBAC; NAC transcription factor 29-like
TrEMBLA0A1U7X5I40.0A0A1U7X5I4_NICSY; NAC transcription factor 29-like
STRINGXP_009787362.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-16NAC domain containing protein 2