PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01463g08015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 304aa MW: 35559.9 Da PI: 6.8801

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01463g08015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	71.8	1.7e-22	8	133	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p +rF Ptd el+ ++Lkk +g++l+ e i+ +iy Pw++ + eek yf s+ +k++++ kr +r+ ++g+Wka+ Niben101Scf01463g08015.1 8 PSVRFYPTDAELI-YFLKKFFKGESLPSECPIRLGEIYGDrPPWEISDH--PEEKIGYFISPLKKRKESHKRFRRTCANGTWKAQ 89 789********.*******9996669999986478*733..344556***********************9 PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++++kg++vg +k+ v+ +g+++k k +W+m ey++ Niben101Scf01463g08015.1 90 TGGDPIKNSKGTVVGFRKSYVYRtrSGKESKQDKINWLMREYSV 133 999***************97678999999*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-27	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	27.428	6	156	IPR003441	NAC domain
Pfam	PF02365	2.1E-14	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSMVSRLPSV RFYPTDAELI YFLKKFFKGE SLPSECPIRL GEIYGDRPPW EISDHPEEKI 60 GYFISPLKKR KESHKRFRRT CANGTWKAQT GGDPIKNSKG TVVGFRKSYV YRTRSGKESK 120 QDKINWLMRE YSVGDDYFRK NNIPKQDIVL CRIKKNIKQR NRKNGVNMEE HEVAQVIETM 180 LREPDYNSSE SATISQRYQI MNAEYTEQHL RGLNKNSQIL TTYDRDEAIL ENHEASINRV 240 YVMTEEANTA ASEQEEAYGQ LFFPGIHEQY CAEADLNTDN SDFLEALLKG GDYIVPDDWW 300 HQFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-13	1	155	12	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-13	1	155	12	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-13	1	155	12	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-13	1	155	12	164	NO APICAL MERISTEM PROTEIN
3swm_A	1e-13	1	155	15	167	NAC domain-containing protein 19
3swm_B	1e-13	1	155	15	167	NAC domain-containing protein 19
3swm_C	1e-13	1	155	15	167	NAC domain-containing protein 19
3swm_D	1e-13	1	155	15	167	NAC domain-containing protein 19
3swp_A	1e-13	1	155	15	167	NAC domain-containing protein 19
3swp_B	1e-13	1	155	15	167	NAC domain-containing protein 19
3swp_C	1e-13	1	155	15	167	NAC domain-containing protein 19
3swp_D	1e-13	1	155	15	167	NAC domain-containing protein 19
4dul_A	1e-13	1	155	12	164	NAC domain-containing protein 19
4dul_B	1e-13	1	155	12	164	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787362.1	0.0	PREDICTED: NAC transcription factor 29-like
Refseq	XP_016447919.1	0.0	PREDICTED: NAC transcription factor 29-like
TrEMBL	A0A1S3Y7L1	0.0	A0A1S3Y7L1_TOBAC; NAC transcription factor 29-like
TrEMBL	A0A1U7X5I4	0.0	A0A1U7X5I4_NICSY; NAC transcription factor 29-like
STRING	XP_009787362.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA814	13	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	2e-16	NAC domain containing protein 2