PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01294g07006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 354aa    MW: 40357.5 Da    PI: 10.0712
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01294g07006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-1510102399
                               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               k+l+p  ++++  l +p +fa ++g+++++   +  +de+ rsW+++l  + ++++++l++ W eF +an+Lk+gD ++F+++  
  Niben101Scf01294g07006.1  10 KKLSPCLNSSRFYLGIPTQFAWANGSNNKNCGSIN-RDEKQRSWNLRL--TTYGSQVYLGGRWCEFHDANDLKVGDHMIFEVIT- 90 
                               667666778888899*********66665555777.************..*******************************987. PP

                               SEE..EEEEE-S CS
                        B3  88 sefelvvkvfrk 99 
                               +++++  k++r+
  Niben101Scf01294g07006.1  91 DGEKPIWKFRRA 102
                               566678887775 PP
2B349.57.8e-16132216287
                               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                               f+ ++++++ ++  l+lp++fa++ g+ +++  +++l+de  r W v++     ++++ + +GW +F  angL++gD   F+l++
  Niben101Scf01294g07006.1 132 FTSTVKPYSISKPVLYLPRDFAKSSGLTNRK-CEMILKDEAQRCWPVRIGPLTDRRHFAIVRGWAKFRAANGLQVGDAYKFELIK 215
                               56778999999999********999988655.6****************77888888*************************998 PP

                               S CS
                        B3  87 r 87 
                               +
  Niben101Scf01294g07006.1 216 N 216
                               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-157101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.3918102IPR003340B3 DNA binding domain
CDDcd100172.21E-12996No hitNo description
SMARTSM010195.9E-79103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1310100IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-1211102IPR003340B3 DNA binding domain
SuperFamilySSF1019369.16E-19127224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-18127224IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-16130217No hitNo description
PROSITE profilePS5086313.38131227IPR003340B3 DNA binding domain
SMARTSM010194.2E-15131227IPR003340B3 DNA binding domain
PfamPF023621.1E-14132217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MHRGPQVRTK KLSPCLNSSR FYLGIPTQFA WANGSNNKNC GSINRDEKQR SWNLRLTTYG  60
SQVYLGGRWC EFHDANDLKV GDHMIFEVIT DGEKPIWKFR RATDIRKKPS NMIPLNAQVA  120
TPTSGDNDLP YFTSTVKPYS ISKPVLYLPR DFAKSSGLTN RKCEMILKDE AQRCWPVRIG  180
PLTDRRHFAI VRGWAKFRAA NGLQVGDAYK FELIKNGKIS IAHFHCKQIF WKGSKEGGAL  240
KQLDLIFDQN FDNSIYVHVS IKFEQYLPLA FAKTTDLMNR HEMILIDEKH TSWSVKAFRN  300
ADAAIHNSVG QSYFICTVKP YCLTNGLLSI PKQFALANGL ANKKCSLIII DEKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432341.16e-97PREDICTED: B3 domain-containing protein REM10-like
RefseqXP_018630037.16e-97PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1S3WXW61e-95A0A1S3WXW6_TOBAC; B3 domain-containing protein REM10-like
STRINGXP_009614320.17e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-22B3 family protein